BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325246

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06265.1 | Symbols:  | hyaluronan mediated motility receptor...   468    2e-131


> AT5G06265.1 | Symbols:  | hyaluronan mediated motility receptor-related 
| chr5:1905292-1908167 FORWARD LENGTH=740
Length=740

 Score =  468 bits (253),  Expect = 2e-131
 Identities = 301/323 (93%), Gaps = 7/323 (2%)
 Strand=Plus/Plus

Query  1    ATGACGAGATCGTGGGTGCTTTTGTTTGTTCTTATGTTCATTGTGTTGACTTCTCAGTTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  ATGACGAGATCGTGGGTGCTTTTGTTTGTTCTTATGTTCATTGTGTTGACTTCTCAGTTT  184

Query  61   GAGTGGAATGAACAAGTTGAGAGTGAA-GCTGAGAC-A--AGTCGTCCTCTGGTTCTTTC  116
            |||||||||||||||||||||| |||| | |||||| |  |||||||||||| |||||||
Sbjct  185  GAGTGGAATGAACAAGTTGAGAATGAAAG-TGAGACTAGTAGTCGTCCTCTGATTCTTTC  243

Query  117  AGATAAAGACCAACCTCATATACCACAAGGCAAAGATTCTGTGCAAGAAAAGAAAATTCT  176
            ||||||||| ||||  ||||| || ||||||||||| ||||| |||| ||||||||||||
Sbjct  244  AGATAAAGAGCAACAACATATCCCTCAAGGCAAAGAATCTGTACAAGTAAAGAAAATTCT  303

Query  177  ATCTCAAGAAAAGAAAATTCAGAAGCTTAA-CGAGCTGGTCCGAGATCTAAGGAGGCAGT  235
            || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct  304  ATTTCAAGAAAAGAAAATTCAGAAG-TTAAACGAGCTGGTCCGAGATCTAAGGAGGCAGT  362

Query  236  TGCTGCAATGCAGAAATGAAAATCAGGTTGAGTTGTCGGAGCTAGAAACTGAGCTTGATC  295
            |||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||
Sbjct  363  TGCTACAATGCAGAAATGAAAATCAGGTTGAGTTAACGGAGCTAGAAACCGAGCTTGATC  422

Query  296  AGCTGCTGGTAACAGGTGTTTAG  318
            |||||||||||||||||||||||
Sbjct  423  AGCTGCTGGTAACAGGTGTTTAG  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5