BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325255

Length=1479
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein...   130    4e-29


> AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein 
1 | chr3:4458461-4461733 REVERSE LENGTH=2197
Length=2197

 Score =  130 bits (70),  Expect = 4e-29
 Identities = 112/132 (85%), Gaps = 4/132 (3%)
 Strand=Plus/Plus

Query  733   AGATACAAATATCCGAACATGAGTATAAC-CCTTGGAGATTTCAAGCTGGAAGTGATGGA  791
             ||||||||||| || || |||| || | |  |||||||||||||||||||||||||||||
Sbjct  1140  AGATACAAATACCCAAATATGACTA-AGCAACTTGGAGATTTCAAGCTGGAAGTGATGGA  1198

Query  792   AGGGGAGTTCACAGACTGTCAGGTT-TCTGTAGTGCTGGGAGAGAGCGGTTCAGGGAAGA  850
             ||||||||||||||||| |||| || || ||| |||| |||||||  ||| ||||||| |
Sbjct  1199  AGGGGAGTTCACAGACTCTCAGATTATC-GTAATGCTTGGAGAGAATGGTACAGGGAAAA  1257

Query  851   CCACCTTCCTCC  862
             | |||||| |||
Sbjct  1258  CGACCTTCATCC  1269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 72941391885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5