BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325295
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06770.1 | Symbols: | KH domain-containing protein / zinc f... 1144 0.0
> AT5G06770.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr5:2090703-2092950 REVERSE
LENGTH=1120
Length=1120
Score = 1144 bits (619), Expect = 0.0
Identities = 691/726 (95%), Gaps = 3/726 (0%)
Strand=Plus/Plus
Query 1 ATGGACGCTCGCAAGAGAGGACGCCCTGAAGCTGCTGCCTCACACAACTCCAATGGCGGA 60
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 164 ATGGATGCTCGTAAGAGAGGACGCCCTGAAGCTGCTGCCTCTCACAACTCCAATGGCGGA 223
Query 61 TTCAAGAGGTCTAAGCAAGAGATGGAATCAATTTCAACTGGTTTAGGAAGCAAATCCAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TTCAAGAGGTCTAAGCAAGAGATGGAATCAATTTCAACTGGTTTAGGAAGCAAATCCAAG 283
Query 121 CCATGCACTAAATTTTTCAGCACTTCTGGATGCCCCTTCGGTGACAATTGTCACTTCTTG 180
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 284 CCATGCACTAAATTTTTCAGCACTTCTGGATGTCCATTTGGTGACAATTGCCACTTCTTG 343
Query 181 CACTATGTACCTGGTGGGTACAATGCTGCAGCGCAGATGACAAATCTCCGACCACCAGTT 240
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 344 CACTATGTGCCCGGTGGGTACAATGCTGCAGCGCAGATGACAAATCTCCGACCACCGGTT 403
Query 241 GCTCAAGTTTCGAGAAATATGCAAGGATCTGGTGGTGTGGGAGGCAGATTCTCAGGGAGA 300
|||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 404 TCTCAAGTTTCCAGAAATATGCAAGGATCTGGTGGTCCCGGCGGCAGATTCTCAGGGAGA 463
Query 301 GGAGATCCAGTATTAGGCCCTGTTTCAATCTTTGGTGCTTCTGCTACTTCCAAGATCAGT 360
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 464 GGAGATCCAGGATCAGGCCCTGTTTCAATCTTTGGTGCTTCT---ACTTCCAAGATCAGT 520
Query 361 GTAGATGCTTCTTTAGCCGGTGCCATCATTGGAAAAGGTGGAATCCATTCCAAACAGATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTAGATGCTTCTTTAGCCGGTGCCATCATTGGAAAAGGTGGAATCCATTCCAAACAGATA 580
Query 421 TGCCGTCAAACAGGAGCGAAATTATCGATTAAAGATCATGAAAGAGACCCAAACTTGAAG 480
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TGCCGTGAAACAGGAGCAAAATTATCGATTAAAGATCATGAAAGAGACCCAAACTTGAAG 640
Query 481 ATTATTGAGCTAGAAGGAACATTTGAACAGATCAATATAGCGAGTGGGATGGTGAGAGAG 540
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 ATTATCGAGCTGGAAGGAACATTTGAACAGATCAATGTAGCGAGTGGGATGGTGAGAGAG 700
Query 541 CTCATAGGGAGGCTTGGATCAGCCAAGAAACCTCAAGGGATTAGTGGTCCTGAAGGGAAA 600
|| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 701 CTTATAGGGAGGCTTGGATCAGTGAAGAAACCTCAAGGGATTGGTGGTCCTGAAGGGAAA 760
Query 601 CCACATCCTGGGAGCAACTACAAGACCAAGATCTGTGACAGGTACTCTAAAGGGAACTGT 660
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 761 CCACATCCTGGGAGCAACTACAAAACCAAGATCTGTGATAGGTACTCTAAAGGGAACTGT 820
Query 661 ACATATGGAGATAGATGCCATTTTGCGCATGGTGAAGCCGAGCTGCGCAGGTCAGGAATC 720
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 821 ACATATGGAGATAGATGCCATTTTGCTCATGGTGAATCTGAGCTGCGCAGGTCAGGAATC 880
Query 721 GCTTAG 726
||||||
Sbjct 881 GCTTAG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5