BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325328
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07130.1 | Symbols: LAC13 | laccase 13 | chr5:2210567-221262... 2765 0.0
AT5G05390.1 | Symbols: LAC12 | laccase 12 | chr5:1594753-159704... 200 4e-50
> AT5G07130.1 | Symbols: LAC13 | laccase 13 | chr5:2210567-2212620
FORWARD LENGTH=1805
Length=1805
Score = 2765 bits (1497), Expect = 0.0
Identities = 1640/1711 (96%), Gaps = 2/1711 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCAAATACGGTCCTTCTTTGTGTTCTTGGCT-GTTTTGTTAGCTTCACTTGTCAA 59
||||||||| | || |||||||| |||| |||||| ||||| ||||||||||||||||
Sbjct 1 ATGGAGCAACTTCGACCCTTCTTTCTGTTGTTGGCTATTTTTG-TAGCTTCACTTGTCAA 59
Query 60 TGCAGAAGTTCACTTTCATGAGTTTGTTGTTCAAGAGACGCCGGTGAAGAGGCTGTGCAG 119
|||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 60 TGCAGAAGTTCACTTTCATGAGTTTGTTATCCAAGAAACGCCGGTGAAGAGGCTGTGCAG 119
Query 120 AGTTCATAACTCGATCACGGTGAATGGACAGTTTCCAGGGCCGACCTTGGAGGTGCGAAA 179
||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 120 AGTCCATAACTCGATCACGGTGAATGGACAGTTTCCAGGGCCAACCTTGGAGGTGAGGAA 179
Query 180 CGGTGATTCCCTTGTCATCACAGCCATAAACAAAGCTCGGTACAACATCACCCTCCACTG 239
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 180 CGGCGATTCCCTTGTCATTACAGCCATAAACAAAGCTCGGTACAACATCAGCCTTCACTG 239
Query 240 GCATGGGATACGGCAGATGAGGAATCCATGGGCGGATGGACCAGAATACATAACCCAGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCATGGGATACGGCAGATGAGGAATCCATGGGCGGATGGACCAGAATACATAACCCAGTG 299
Query 300 CCCAATCCAACCAGGAGGGAGTTACACGTACAGGTTCACCATTGAAGACCAAGAAGGTAC 359
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 300 CCCAATCCAACCAGGAGGGAGTTACACCTACAGGTTTACCATGGAAGACCAAGAAGGTAC 359
Query 360 GTTGTGGTGGCATGCCCACAGTAGATGGCTGCGAGCCACCGTGTATGGCGCTCTCATTAT 419
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 ATTGTGGTGGCATGCCCACAGTAGATGGCTGCGAGCCACCGTGTATGGTGCTCTCATTAT 419
Query 420 CCGCCCTCCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCGCCCTCCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTAC 479
Query 480 CCTCCTCTTAGGGGAGTGGTGGGACAGAAACCCCATGGATGTCCTCAACTTAGCCCAGTT 539
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CCTCCTCTTAGGAGAGTGGTGGGACAGAAATCCCATGGATGTCCTCAACTTAGCCCAGTT 539
Query 540 CACCGGAGCAGCACCAAACATCTCAGACGCCTTCACCATCAATGGTCAGCCTGGCGATCT 599
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 540 CACTGGAGCAGCACCAAACATCTCAGACGCCTTTACCATCAATGGTCAGCCTGGTGATCT 599
Query 600 CTACAGATGTTCTAGCCAAGAAACTTTAAGATTTCTAGTGGGGTCAGGAGAGATTGTCCT 659
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 CTACAGATGCTCCAGCCAAGAAACTTTAAGATTTCTAGTGGGGTCAGGAGAGATAGTCCT 659
Query 660 CCTCAGGGTCATCAATTCTGCTTTGAACCAAGAACTCTTCTTTGGTGTCGCTAATCACAA 719
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CCTCAGGGTCATCAACTCTGCTTTGAACCAAGAACTCTTCTTTGGTGTCGCGAATCACAA 719
Query 720 ACTGACAGTGGTCGCTGCGGATGCCTCCTACACCAAACCTTTCTCGACTAATGTCATAAT 779
||| |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 720 ACTCACAGTGGTTGCGGCGGATGCCTCCTACACCAAACCATTCTCGACCAATGTCATAAT 779
Query 780 GTTAGGTCCAGGTCAGACAACTGATGTGCTTCTAACCGCAGACCAACCGCCAGCACATTA 839
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 780 GTTAGGTCCTGGTCAGACAACTGATGTGCTTCTAACTGCAGACCAACCGCCAGCACACTA 839
Query 840 CTACATGGCAGCACATGCCTACAACAGTGCCAACGCTGCCTTTGACAACACCACAACCAC 899
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 CTACATGGCAGCACATGCCTACAACAGTGCCAATGCTGCCTTTGACAACACCACAACCAC 899
Query 900 TGCAATCCTCAAGTACAAAGATGCCTCCTGTGTTACTCTTCAAGGTAAATCACAGGCACA 959
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 900 CGCAATCCTCAAGTACAAAGACGCCTCCTGTGTTACTCTTCAAGCTAAATCACAGGCACG 959
Query 960 GGCAATACCTGCACAGCTGCCAGGATTCAACGACACAGCAACAGCAGCAGCATTCACAGC 1019
||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GGCAATACCCGCACAACTACCAGGATTCAACGACACAGCAACAGCAGCAGCCTTCACAGC 1019
Query 1020 GCAGATGAAGAGTCCTTCGAAAGTAAAAGTGCCCCTGGAGATTGATGAGAACTTGTTTTT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGATGAAGAGTCCTTCGAAAGTAAAAGTGCCCCTGGAGATTGATGAGAACTTGTTTTT 1079
Query 1080 CACAGTGGGATTGGGACTATTCAACTGCCCAACCCCCAACACACAAAGGTGTCAAGGCCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CACAGTGGGATTGGGACTATTCAACTGCCCAACCCCCAACACACAAAGGTGTCAAGGCCC 1139
Query 1140 TAACGGAACACGCTTCACCGCGAGCATCAACAATGTCTCTTTCGTCTTCCCCAAACAAAA 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAACGGAACACGCTTCACCGCAAGCATCAACAATGTCTCTTTCGTCTTCCCCAAACAAAA 1199
Query 1200 CTCCATAATGCAAGCGTATTACCAAGGCACTCCCGCAGGTGTTTTCACCACAGACTTCCC 1259
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 CTCCATAATGCAAGCCTATTACCAAGGCACTCCCACAGGTGTTTTCACCACAGACTTCCC 1259
Query 1260 TCCAACGCCTCCTGTCACATTTGACTATACAGGAAACGTGAGCAGAGGGCTATGGCAACC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 TCCAACGCCTCCTGTCACATTTGACTATACAGGAAACGTGAGCAGAGGGCTATGGCAGCC 1319
Query 1320 TACCCGCGGAACAAAGGCCTACAAACTAAAGTTCAATTCAAAAGTGCAGATTATATTGCA 1379
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 TACTCGCGGAACAAAGGCCTACAAACTAAAGTTCAATTCGCAAGTGCAGATTATATTGCA 1379
Query 1380 AGACACGAGCATCGTGACCACTGAGAATCACCCTATGCATCTCCACGGCTACGAGTTCTA 1439
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1380 AGACACGAGCATCGTGACCACTGAGAATCACCCAATGCATCTCCATGGCTACGAGTTCTA 1439
Query 1440 CGTAGTTGGGACAGGTGTTGGTAACTTCAACCCAAATACAGACACAGCTTCCTTTAACCT 1499
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1440 CGTAGTTGGGACAGGTGTTGGTAACTTCAACCCAAATACAGACACATCCTCCTTTAACCT 1499
Query 1500 CATCGACCCACCACGAAGAAACACAATCGGAACACCACCAGGCGGATGGGTAGCCATCAG 1559
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1500 CATCGACCCACCACGAAGAAACACAATCGGAACACCTCCAGGTGGATGGGTAGCCATCAG 1559
Query 1560 ATTCGTGGCGAATAATCCAGGAGCGTGGCTGATGCACTGCCACATCGACTCACATATATT 1619
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 ATTCGTTGCCAATAATCCAGGAGCGTGGCTGATGCACTGCCACATTGACTCACATATATT 1619
Query 1620 CTGGGGTTTAGCAATGGTCTTCTTAGTGGAGAACGGAGAAGGGCATTTGCAATCTGTACA 1679
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1620 CTGGGGTTTAGCAATGGTCTTCTTAGTAGAGAACGGAGAAGGACATTTGCAGTCTGTACA 1679
Query 1680 GTCTCCACCATTGGACTTACCCCAATGTTAA 1710
|||||||||||||||||||||||||||||||
Sbjct 1680 GTCTCCACCATTGGACTTACCCCAATGTTAA 1710
> AT5G05390.1 | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042
FORWARD LENGTH=1698
Length=1698
Score = 200 bits (108), Expect = 4e-50
Identities = 630/874 (72%), Gaps = 67/874 (8%)
Strand=Plus/Plus
Query 76 CATGAGTTTGTTGTTCAAGAGACGCCGGTGAAGAGGCTGTGCAGAGTTCA-TAACTCGAT 134
||||| ||||| | |||||||||||||||||||||||||||| || | |||| | ||
Sbjct 85 CATGATTTTGTCATACAAGAGACGCCGGTGAAGAGGCTGTGCA-AGACCCGTAACGCCAT 143
Query 135 CACGGTGAATGGACA-GTTTCCAGGGCCGAC-CTTGGAGGTGCGA-AACGGTGATTCCCT 191
||| || || ||| | |||||| ||||| || || | || | | | ||||| || | ||
Sbjct 144 CACCGTCAACGGA-ATGTTTCCGGGGCCTACGCTCGAAG-T-CAACAACGGCGACACTCT 200
Query 192 TGTCA-TCACAGC-CATAAACAAAGCTCGGTACAACATCACCCTCCACTGGCATGG-GAT 248
|| | ||| || ||||| | ||||| ||||| |||||| |||| |||||||| | |
Sbjct 201 TGA-AGTCAAAGTGCATAACCGT-GCTCGTTACAATATCACCATCCATTGGCATGGAG-T 257
Query 249 -ACGGCAGATGAGGAATCC--ATGGGCGGATGGACCAGAATACATAACCCAGTGCCCAAT 305
| ||||||| || || || |||||| ||||| ||||||| | | ||||| ||||| ||
Sbjct 258 GA-GGCAGATAAG-AA-CCGGATGGGCTGATGGCCCAGAATTCGTGACCCAATGCCCGAT 314
Query 306 CCAACCAGGAGGGAGTTACACGTACAGGTTCACCATTGAAGACCAAGAAGGTACGTTGTG 365
|| ||| ||| ||| ||||||||| | ||||| || ||| ||||||||| || |||||
Sbjct 315 CCGACCCGGAAAGAGCTACACGTACCGTTTCACTATCCAAGGCCAAGAAGGGACATTGTG 374
Query 366 GTGGCATGCCCACAG-TAGATGGCTGCGAGCCACCGTGTATGGCGCTCTCATTATCCGCC 424
|||||| || ||||| | ||||| |||||||| || || ||||| ||||| || | ||
Sbjct 375 GTGGCACGCTCACAGCTCT-TGGCTCCGAGCCACTGTCTACGGCGCACTCATCATTCACC 433
Query 425 CT-CCGCTCTCTTCTCCTCATTACCCTTTTCCAGTTATTCCCAAGAGAGAGATTACCCTC 483
| || | || | ||||| || || ||| || | | || | | | | |||||
Sbjct 434 CAACC-C-CTGGT-TCCTCTTTTCC-TTTCCC--TAAA-CCGGACCGCCAAACCGCCCTC 486
Query 484 CT-CTTAGGGGAGTGGTGGGACAG-AAACCCCATGGATGTCCTCAACTTAGCCCAGTTC- 540
| || ||||| |||||| | | ||| || | ||||| | ||| ||| | | |
Sbjct 487 ATGCTC-GGGGAATGGTGGAAT-GCAAATCCGGTTGATGTAATTAACCAAGCG-ACT-CG 542
Query 541 A-CCGGAGCAGCACCAAACATCTCAGACGCCT-TCACCATCAATGGTCAGCCTGGCGATC 598
| ||||||| || || || || || ||||| | | |||||||||||||| || || ||||
Sbjct 543 AACCGGAGCTGCTCCTAATATATCCGACGCTTAT-ACCATCAATGGTCAACCGGGTGATC 601
Query 599 TCTACAGAT-GTTCTAGCCAA-GAAACT-TTA-AGATTTCTAGTGGGGTCAGGAGAGATT 654
|||| | || | || | |||| || ||| || || | | | | ||||| || |
Sbjct 602 TCTATA-ATTGCTCGA-CCAAAGAGACTGTTGTAG-TACCGA-TAAATTCAGGGGAAACA 657
Query 655 -GTCCTCCTCAGG-GTCATCAATTCTGCTTTGAACCAAGAACTCTTCTTTGG-TGTCGCT 711
||| |||| | | || ||||| | ||||| |||||| || || ||| ||| |||
Sbjct 658 AGTC-TCCT-ACGAGTGATCAACGCAGCTTTAAACCAACCGCTATT-TTTCACTGTGGCT 714
Query 712 AATCACAAACTGACAGTGGTCGCTGCGGATGCCTCCTACAC-CAAACCTTTCTCGACTAA 770
|| ||||| || || || || | || || || || ||| | |||||| ||| | || ||
Sbjct 715 AACCACAAGCTCACTGTAGTTGGAGCCGACGCATCTTAC-CTCAAACCATTCACCACAAA 773
Query 771 TGTCATAATGTTAGGTCCAGGTCAGACAACTGATGTGCTTCTAACCGCAGACCAACCGCC 830
||| | |||||||||||||| || || ||||| || |||||||||||||||||||| ||
Sbjct 774 GGTCCTTATGTTAGGTCCAGGCCAAACTACTGACGTACTTCTAACCGCAGACCAACCCCC 833
Query 831 AGCACATTACTACATGGCAGCAC-ATGCCTAC-AACAGTGC-CAA--CGCTGCC-TTTGA 884
| || || ||||| |||||| | || ||| || || || ||| ||| || |||||
Sbjct 834 AAAACGCTATTACATAGCAGCAAGA-GCTTACCAA-AGCGCTCAAAACGCA-CCGTTTGA 890
Query 885 CAACACCACAACCACTGCAATCCTC-AAGTACAA 917
||||||||||| || || || ||| || |||||
Sbjct 891 TAACACCACAACTACAGCCATTCTCCAA-TACAA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5