BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325332
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07170.1 | Symbols: | Cell cycle regulated microtubule asso... 835 0.0
> AT5G07170.1 | Symbols: | Cell cycle regulated microtubule associated
protein | chr5:2222767-2225098 FORWARD LENGTH=1227
Length=1227
Score = 835 bits (452), Expect = 0.0
Identities = 640/725 (88%), Gaps = 35/725 (5%)
Strand=Plus/Plus
Query 838 ACAAGTTTTCCTCTCTCTTATACTCTATGCCTCAAACTCAGGATACCAAAAGGCAAAAAC 897
||||||| || |||| |||||| || ||||||||||| || |||| ||||||||||||||
Sbjct 533 ACAAGTTCTCATCTCACTTATATTCAATGCCTCAAACCCAAGATAACAAAAGGCAAAAAC 592
Query 898 TGGAAACCGGCTACTTGCGCAAGGTGCTCTCAAACATCATCTAATCTCACTGCAACACAA 957
| |||||||||| |||||||||||| | || || | | | | || ||| |
Sbjct 593 TCGAAACCGGCTTCTTGCGCAAGGT--T-TC--ACGGC-T-GGA-C-CA----AACTC-- 637
Query 958 TTTGTTTTGGAACTAATATTTATTAGCTTTTCAAAGAAGGGATCCAAAGTCACTGTTCCA 1017
|| |||| || ||| | || || |||||||||| |||||||||||||||||
Sbjct 638 CTT-TTTT---AC--ATA---A--AG--TTCCAAAGAAGGGGTCCAAAGTCACTGTTCC- 683
Query 1018 AAG-GAACCTAACCTCAAGACTGCCCAAAGGGCTGCAAGAAACCGGTTTAAGGCTCAGTC 1076
||| || ||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 684 AAGAGAGCCTAACCTCAAGACTGCCCAAAGAGCTGCAAGAAACCGGTTTAAGGCTAACTC 743
Query 1077 AGCACCCGAGCAGATCGCGAAATTTATCTCTACTATGGATAAACCAGTTCAAGAAACTTC 1136
||||||||||||||| || ||||| ||||||| |||| ||||| ||||||||| |||| |
Sbjct 744 AGCACCCGAGCAGATTGCAAAATTCATCTCTAATATGAATAAAACAGTTCAAGGAACTAC 803
Query 1137 TTCACCATCTTTGCCTAAAAAGAATACGCCTCGCCA---CCAAGATTTACAGGCATTTCA 1193
|||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||
Sbjct 804 TTCACCATCTTTGCCTAAGAAGAATACGCCTCACCACCCCCAAGATCTACAGGCATTTCA 863
Query 1194 TCTAAGGACATCTCTTAGAGCAAGAGAACGCTCTTCCAGTGCTAAAATTGCACCAACCGA 1253
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 864 TCTAAGGACATCTCTTAGAGCGAGGGAACGCTCTTCCAGTGCTAAAATTGCACCAACCGA 923
Query 1254 TGATCCTATACACTCCTTAACGTCAAAGTCCGTTGGTACCA-GAAAGGGTAGGAAAGTCA 1312
|||| ||| |||||||||||||||||||||||||||| ||| | ||||||| ||| ||||
Sbjct 924 TGATTCTAAACACTCCTTAACGTCAAAGTCCGTTGGTTCCATG-AAGGGTATGAAGGTCA 982
Query 1313 AGGCGTCCCGCAGCTCAAAGTCCAATTGTCAAGTTTATGAATCTAAGATTTGCCCTGTAG 1372
||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||| |||
Sbjct 983 AGGCGTCTCGCAGCTCAAATTCCAATTGTCAAGTTTATGGACCTAAGATTTGCCCTCTAG 1042
Query 1373 ACTCAAAGGTGATGCAAACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGaaa 1432
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 ACTCAAAGGTGATGCAGACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAA 1102
Query 1433 aaaaTCTTCTGAGGGAATTTGAAGCTCCAATGGACACAAATTTTCGAGATGAACCCTTTA 1492
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1103 ACAATCTTCTGAGGGAATTTGAAGCTCCAATGAACACAAATTTTCGAGATGAACCATTTA 1162
Query 1493 TTGAATCTCTTAGAAAACTATGTCTCACTTCAGATACTGATCCAGTCGGGGTACTTATAG 1552
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1163 TTGAATCTCTTAGAAAACTATGTCTCACGTCAGATACTGATCCAGTCGGGGTACTTATAG 1222
Query 1553 ATTAG 1557
|||||
Sbjct 1223 ATTAG 1227
Score = 377 bits (204), Expect = 1e-103
Identities = 363/430 (84%), Gaps = 50/430 (12%)
Strand=Plus/Plus
Query 462 AATGGATCCGGAAACAATGGATATATTTGCAGAAGATTTCTCCC--------TT-G--A- 509
||| |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 75 AATTGATCCGGAAACAATGGATATATTTGCAGAAGATTTCTCCCTTGAGAAATTCGACAT 134
Query 510 -G-----GAATTCGACATCGATTTCGAATTCGATGCTCCTCGATTCTACGATTTCTCCAA 563
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 135 CGATTTCGAATTCGACATCGATTTCGAATTCGACGCTCCTCGATTCTACGATTTCTCCAA 194
Query 564 ACCTGAA----ATT--GATTC--A-GAAACAGAGCTCTGGTTTGAATCAGCTGGAAACTA 614
||||||| ||| || | | ||||||||||| |||||| ||||||||||||||||
Sbjct 195 ACCTGAACTCGATTCAGAAACAGAGGAAACAGAGCTTTGGTTTCAATCAGCTGGAAACTA 254
Query 615 TCCTCCCTCACCATTTAGCCTAAATTTGAGATACGAAGACAAACATCTCGAGATCCCTAA 674
|||||| |||||||||||| || |||||||||||||||| |||||||| |||||||||||
Sbjct 255 TCCTCCTTCACCATTTAGCATACATTTGAGATACGAAGAAAAACATCTTGAGATCCCTAA 314
Query 675 ACCCATCTCAGATCAATAC---------------AAT------GCTCCTAAAGATGTTCC 713
|||| |||||||||||||| ||| |||||||||||||||||
Sbjct 315 ACCCGTCTCAGATCAATACAATGGGTTTATATATAATAACCAAGCTCCTAAAGATGTTCC 374
Query 714 CAATGCGACGCACAAGTCTAAAA-CAAAACCTTTTTTACGAAAGAACTCAACTTTAACGA 772
||| |||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 375 CAAGGCGACGCATAAGTCTAAAACCAAAA-CTTATTTACGAAAGAACTCAACTTTAACGA 433
Query 773 GACCCACTGCTTCTTTGTTGGCAAGACACAATAAACCTCTAGATATTTACTCTGTTCGGC 832
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 434 GACCCACTGCTTCTTTGTTGGCAAGACAGAATAAACCTCTCGATATTTACTCTGTTCGGC 493
Query 833 TTCTCACAAG 842
||||||||||
Sbjct 494 TTCTCACAAG 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5