BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325337
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 | ch... 2676 0.0
AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 | ch... 1341 0.0
> AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 |
chr5:2252237-2256018 FORWARD LENGTH=1866
Length=1866
Score = 2676 bits (1449), Expect = 0.0
Identities = 1746/1887 (93%), Gaps = 30/1887 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTCAATCTTTTC-ACAACCAAAGCTCTATCTTGAGAATCAATGTCATGGT 59
||||||| ||||||||| |||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGCTTCTGCTCAATC-TTTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGT 59
Query 60 TGTGGACGACGATCGTGTTTTCCTTAATATTTTGTCACGCATGCTT-GAGAGGTCCAAAT 118
||||||||| |||| |||||||||| |||| |||||||||||||| | | |||||||
Sbjct 60 TGTGGACGATGATCATGTTTTCCTTGATATCATGTCACGCATGCTTCAACA-CTCCAAAT 118
Query 119 ACATAGATCCATCGGTTATGAAGATCACAGTTGTAGCGGTAGACGATCCAAAGAAAGCAT 178
||| ||||||||| |||||| ||||| ||||| |||| ||||||||||| ||||||||||
Sbjct 119 ACAGAGATCCATCAGTTATGGAGATCGCAGTTATAGCTGTAGACGATCCGAAGAAAGCAT 178
Query 179 TATCTACACTAAAAATTCAACGAGACCATATAGATCTCATAATTACAGATTATTACATGC 238
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 179 TATCTACTCTAAAAATTCAACGAGACAATATAGATCTCATAATCACAGATTATTATATGC 238
Query 239 CTAGCATGAACGGTCTACAACTCAAAAAACAGATTACTCAGGAATTTGGAAATTTACCGG 298
|| | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 239 CTGGTATGAACGGTTTACAACTCAAAAAACAAATCACTCAGGAATTTGGAAATTTACCGG 298
Query 299 TCTTAGTTATGTCATCGGACCCCAACAAAGAACAGGAGAGTTTAAGTTGTGGAGCGATGG 358
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 299 TCTTAGTTATGTCATCGGACACCAACAAAGAAGAGGAGAGTTTAAGTTGTGGAGCGATGG 358
Query 359 GTTTCATTCCAAAACCCATAGAACC-AGCTGACTTAACAAAGATTTACCAGTTTGCTTTA 417
|||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||
Sbjct 359 GTTTCATTCCAAAACCCATACATCCTA-CTGACTTAACAAAGATTTACCAGTTTGCTTTA 417
Query 418 ACCTACAAGATGAACGGTAAGTCAACATTATTGACCGAGCAAAACCACAAGGATGCAAAT 477
| | |||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct 418 AGCAACAAGAGGAACGGTAAGTCAACACTATCGACCGAGCAAAACCACAAGGACGCAGAT 477
Query 478 GTTAGTGTCCCTCAGCAAATCACGTTGATTCCTGAGCAAGCTAACGTCTTAAAGACCAAG 537
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 478 GTTAGTGTCCCTCAGCAAATCACGTTGGTTCCTGAGCAAGCTGACGTCTTAAAGACCAAG 537
Query 538 AAGAAGAACTGCTCATCTAAATCGGATTCAAGAACCGTGAACAGTACAAATGGAAGTTGT 597
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGGAAGAACTGCTCATTTAAATCGGATTCAAGAACCGTGAACAGTACAAATGGAAGTTGT 597
Query 598 GTTAGTACGGATGGTTCAAGaaaaaatcgaaaaagaaaaCCCAACGGTGGTCCTAGTGAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTAGTACGGATGGTTCAAGAAAAAATCGAAAAAGAAAACCCAACGGTGGTCCTAGTGAT 657
Query 658 GATGGTGAATCTCTGTTGCAACCCGCCAAGAAGAAAAAGATTAC-CTGGACGGATTCTCT 716
||||| || ||| ||| ||||||||| || |||||||||||| | ||||||||||||||
Sbjct 658 GATGGCGAGTCTATGTCGCAACCCGCGAAAAAGAAAAAGATT-CAGTGGACGGATTCTCT 716
Query 717 TCACGACCTATTCTTACAGGCTATCCGACATATCGGTCTTGATAAGGCGGTGCCAAAAAA 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TCACGACCTATTCTTACAGGCTATCCGACATATTGGTCTTGATAAGGCGGTGCCAAAAAA 776
Query 777 GATCTTAGCGTTCATGAACGTATCATACTTGACAAGAGAGAACGTTGCCAGCCATTTACA 836
|||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 777 GATCCTAGCGTTCATGAGCGTACCATACTTGACAAGAGAGAACGTAGCCAGCCATTTACA 836
Query 837 GAAATATCGGATATTCTTGAGGAGAGTCGCGGATCAAGGTTTTTCA-AGCATGTTGTCGG 895
||||||||||||||||||||| ||||| ||||| || ||||| | | |||||||||||||
Sbjct 837 GAAATATCGGATATTCTTGAGAAGAGTTGCGGAGCAGGGTTTGT-ATAGCATGTTGTCGG 895
Query 896 ATAGAGGCATAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACTTCAACTGTT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 ATAGAGGCATAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACTTCAACTATT 955
Query 956 ACACACCCTTTACTTCTTGGTATGACACAAGTCTTAACAATAGATCATTCTATTCCAAAC 1015
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 ACACACCATCTACTTCTTGGTATGACACAAGGCTTAACAATAGATCATTCTATTCCAAAC 1015
Query 1016 CCGGACATGGCCTTGGACAGTCTAGACTCTTGTCCAAAACACGTGAGCCCGTCCGCTTCA 1075
||| ||||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 1016 CCGTACATGGCTTTGGACAGTCTAAACTCTTGTCCACAACACGTGAGCCCGTCTGCTTCA 1075
Query 1076 ACCTGATGCCTTACAACTACATGAACCGGTCATCCACCTATGAGCCGCACCATATAGGAT 1135
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1076 ACCAGATGCCTTACAACTACATGAACCGGTCATCCACCTATGAGCCGCACCGTATTGGAT 1135
Query 1136 CTGGATCAAACTTGACGCTGCCCATCCAAAACAACCTCAGTTTCCCAAACCAACCATCTC 1195
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1136 CTGGATCAAACTTGACGCTGCCCATCCAGAGCAACCTCAGTTTCCCAAACCAACCATCTC 1195
Query 1196 AAAACGAAGATATAAGAAGCTTTTTCGAACCACCGGCCGTGATGGCGAACAAAATCGTCC 1255
|||||||||| | ||||||||||||||||||||| | |||||||| |||||||||| ||
Sbjct 1196 AAAACGAAGAAAGAAGAAGCTTTTTCGAACCACC--C-GTGATGGCAAACAAAATCGCCC 1252
Query 1256 AAACATCTCAAGTTCTTGGGTTTGGACAACTTGGACCGTCAACTATTAGTGGTAATAATT 1315
||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1253 AAACATCTCAAGTTCTTGGGTTTGGACAACTTGGACCGTCAGCTATCAGTGGTCATAATT 1312
Query 1316 TCAACAATAACATGATGAGTAGCTATGGAAGTTTGACTCCGAATCAACCGGGATCTAGCC 1375
||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| ||||||
Sbjct 1313 TCAACAATAACATGACGAGTAGATATGGAAGTTTGATTCCGAGCCAACCGGGACCTAGCC 1372
Query 1376 ACTTCTCGTATGGGATGCAATCGTTCTTAAACAATGAGAACGCAGCATGTAACCCTCAGC 1435
||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1373 ACTTCTCCTATGGGATGCAATCGTTCTTAAACAATGAGAACGTAACATATAACCCTCAGC 1432
Query 1436 CACCTGCCAATGCAACTACACAGCCAAATCTTGCTGAATTTCCTCAACTGGAGAATCTCG 1495
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1433 CACCTGCCAATGCAACTACACAGCCAAATCTTGATGAACTTCCTCAACTGGAGAATCTCA 1492
Query 1496 ACTTATACAATGATCTCGGCCACACTAGTGACCTTCCTTACAACATAAGTAACTTTCAAT 1555
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1493 ACTTATACAATGATTTCGGCAACACTAGTGAGCTTCCTTACAACATAAGTAACTTTCAAT 1552
Query 1556 TCGATGACAACAAGCAGCAACAAGGAGAAGCGGATTCCACCAAATTTGATCTCCC---TG 1612
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 1553 TCGATGACAACAAGCATCAACAAGGAGAAGCGGATCCCACCAAATTTGAGCTCCCAGCTG 1612
Query 1613 CAAA-TTCTTCGACTGAACTGAATCAGATTTTGTCTCTTGAAGACAATGGTGACTGGACC 1671
|||| || |||||||||||||||||| | | ||||| ||||||||||||||
Sbjct 1613 CAAAATT-TTCGACTGAACTGAATCA--T---G-------AAGACGATGGTGACTGGACC 1659
Query 1672 TTCGCGAACGTAAACCAGGCTCAATCTAATGGAGAAACATCGAACACTATTGCTGCTCCG 1731
|||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1660 TTCGTGAACATAAACCAGGGTCAATCTAATGGAGAAACATCGAACACTATTGCTTCTCCG 1719
Query 1732 GAAACTAATCCTCCAATTTTCAACATGAACCCTAATCAGAATCAGGGACAAGATGTTCCA 1791
|| |||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1720 GAGACTAATACTCCAATTTTGAACATTAACCATAATCAGAATCAGGGACAAGATGTTCCA 1779
Query 1792 GAGTTTACCGATTGGTCGTTTTTGGATCCGCAGGAATTGGTTGATGACGACTTCATGAAC 1851
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1780 GAGTTTAACGATTGGTCGTTTTTGGATCCACAGGAATTGGTTGATGACGACTTCATGAAC 1839
Query 1852 TCTCTGTTCAACAATGACATGAATTGA 1878
|||||||||||||||||||||||||||
Sbjct 1840 TCTCTGTTCAACAATGACATGAATTGA 1866
> AT2G27070.1 | Symbols: ARR13, RR13 | response regulator 13 |
chr2:11555781-11560215 REVERSE LENGTH=1728
Length=1728
Score = 1341 bits (726), Expect = 0.0
Identities = 985/1107 (89%), Gaps = 29/1107 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTTGCTCAATCTTTTC-ACAACCAAAGCTCTATCTTGAGAATCAATGTCATGGT 59
||||||||||||||||| | || |||||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGCTTTTGCTCAATC-TGTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGT 59
Query 60 TGTGGACGACGATCGTGTTTTCCTTAATATTTTGTCACGCATGCTTGAGAGGTCCAAATA 119
||||||||| |||||||||||||| |||||| ||||||||||||||| | |||| | |
Sbjct 60 TGTGGACGATAATCGTGTTTTCCTTGATATTTGGTCACGCATGCTTGAAAAGTCC--A-A 116
Query 120 CATAGATCCATCGGTTATGAAGATCACAGTTGTAGCGGTAGACGATCCAAAGAAAGCATT 179
|| | || | | | ||||||| ||| |||| |||||| |||| |||||||||||
Sbjct 117 -AT--A--CA---G--A-G-AGATCACGGTTATAGCTGTAGACTATCCGAAGAAAGCATT 164
Query 180 ATCTACACTAAAAATTCAACGAGACCATATAGATCTCATAATTACAGATTATTACATGCC 239
|||||| ||||||| ||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 165 ATCTACTCTAAAAAATCAACGAGATAATATAGATCTTATAATCACAGATTATTACATGCC 224
Query 240 TAGCATGAACGGTCTACAACTCAAAAAACAGATTACTCAGGAATTTGGAAATTTACCGGT 299
| |||||||||||||||||||||||||||| || ||||| ||||||||||||||| | ||
Sbjct 225 TGGCATGAACGGTCTACAACTCAAAAAACAAATCACTCAAGAATTTGGAAATTTATCAGT 284
Query 300 CTTAGTTATGTCATCGGACCCCAACAAAGAACAGGAGAGTTTAAGTTGTGGAGCGATGGG 359
||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct 285 CTTAGTTATGTCATCGGACCCAAACAAAGAAGAAGAGAGTTTAAGTTGTGGAGCAATGGG 344
Query 360 TTTCATTCCAAAACCCATAGAACCAGCTGACTTAACAAAGATTTACCAGTTTGCTTTAAC 419
|||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 345 TTTCATTCCAAAACCCATAGCACCAACTGACTTACCAAAGATTTACCAGTTTGCTTTAAC 404
Query 420 CTACAAGATGAACGGTAAGTCAACATTATTGACCGAGCAAAACCACAAGGATGCAAATGT 479
|||||||| ||||||||| |||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 405 CTACAAGAGGAACGGTAAATCAACATTATCGACCGAGCAAAACCAAAAGGACGCAAATGT 464
Query 480 TAGTGTCCCTCAGCAAATCACGTTGATTCCTGAGCAAGCTAACGTCTTAAAGACCAAGAA 539
|||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||
Sbjct 465 TAGTGTCCCTCAGCAAATCATGTTGGTTCCTGAGCAAGCTTACGTTTTAAAGACCAAGAA 524
Query 540 GAAGAACTGCTCATCTAAATCGGATTCAAGAACCGTGAACAGTACAAATGGAAGTTGTGT 599
||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||
Sbjct 525 GAAGAACTGCTCATCTAAATCAGATACAAGAACCGTGAACAGTACAAATGTAAGTCATGT 584
Query 600 TAGTACGGATGGTTCAAGaaaaaatcgaaaaagaaaaCCCAACGGTGGTCCTAGTGATGA 659
||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 585 TAGTACGAATGGTTCAAGAAAAAATCGGAAACGAAAACCCAAAGGTGGTCCTAGTGATGA 644
Query 660 TGGTGAATCTCTGTTGCAACCCGCCAAGAAGAAAAAGATTACCTGGACGGATTCTCTTCA 719
||| || ||||||| ||||||| ||||||||||||||||| |||||| || |||||||
Sbjct 645 TGGCGAGTCTCTGTCGCAACCCCCCAAGAAGAAAAAGATTTGGTGGACGAATCCTCTTCA 704
Query 720 CGACCTATTCTTACAGGCTATCCGACATATCGGTCT-TGATAAGGCGGTGCCAAAAAAGA 778
|||||||||||||||||||||| |||||||||| | |||||||| |||||| |||||||
Sbjct 705 AGACCTATTCTTACAGGCTATCCAACATATCGGT-TATGATAAGGTGGTGCCCAAAAAGA 763
Query 779 TCTTAGCGTTCATGAACGTATCATACTTGACAAGAGAGAACGTTGCCAGCCATTTACAGA 838
|| | ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 764 TCCTCGCGATCATGAACGTACCATACTTGACAAGAGAGAACGTAGCCAGCCATTTACAGA 823
Query 839 AATATCGGATATTCTTGAGGAGAGTCGCGGATCAAGGT--TTTTCAAGCATGTTGTCGGA 896
|||||||| ||||| ||| |||||||| | |||||||| ||| |||||| |||| ||
Sbjct 824 AATATCGGTTATTCGTGAAGAGAGTCGTGCATCAAGGTAGGTTT--AGCATGCTGTCAGA 881
Query 897 TAGAGGCATAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACTTCAACTGTTA 956
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 882 TAGAGGCAAAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACGTCAACTATTA 941
Query 957 CACACCCTTTACTTCTTGGTATGACACAAGTCTTAACAATAGATCATTCTATTCCAAACC 1016
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 942 CACACCATCTACTTCTTGGTATGAGACAAGTCTTAACAATAGATCATTCTATTCCGAATC 1001
Query 1017 CGGACATGGCCTTGGACAGTCTAGACTCTTGTCCAAAACACGTGAGCCCGTCCGCTTCAA 1076
|| |||||| | || ||||||||||||||| || |||||||||||||||||| |||
Sbjct 1002 CGTACATGGAC----AC--TCTAGACTCTTGTCCGAAGCACGTGAGCCCGTCCGCTACAA 1055
Query 1077 CCTGATGCCTTACAACTACATGAACCG 1103
|| ||| |||||||||||||||||||
Sbjct 1056 CCAAATGTCTTACAACTACATGAACCG 1082
Score = 586 bits (317), Expect = 3e-166
Identities = 387/420 (92%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 1167 CAACCTCAGTTTCCCAAACCAACCATCTCAAAACGAAGATATAAGAAGCTTTTTCGAACC 1226
|||| |||||||| |||||||||||||||||||||||| | ||||| | ||||||| ||
Sbjct 1083 CAACATCAGTTTCGAAAACCAACCATCTCAAAACGAAGAAACAAGAACCGTTTTCGAGCC 1142
Query 1227 ACCGGCCGTGATGGCGAACAAAATC-GTCCAAACATCTCAAGTTCTTGGGTTTGGACAAC 1285
| | |||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1143 A-C--CCGTGATGGCGAACAAAATCAG-CCAAACATCTCAAGTTCTTGGGTTTGGACAAC 1198
Query 1286 TTGGACCGTCAACTATTAGTGGTAATAATTTCAACAATAACATGATGAGTAGCTATGGAA 1345
||||||||||| |||| |||||| |||||||||| | |||||||||||| ||||||||||
Sbjct 1199 TTGGACCGTCAGCTATCAGTGGTCATAATTTCAATACTAACATGATGAGCAGCTATGGAA 1258
Query 1346 GTTTGACTCCGAATCAACCGGGATCTAGCCACTTCTCGTATGGGATGCAATCGTTCTTAA 1405
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct 1259 GTTTGACTCCGAATCAACCGGGAACTAGCCACTTCTCCTATGGGATGCAATCGGTCTTAA 1318
Query 1406 ACAATGAGAACGCAGCATGTAACCCTCAGCCACCTGCCAATGCAACTACACAGCCAAATC 1465
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACAATGAGAACGCAACATATAACCCTCAGCCACCTGCCAATGCAACTACACAGCCAAATC 1378
Query 1466 TTGCTGAATTTCCTCAACTGGAGAATCTCGACTTATACAATGATCTCGGCCACACTAGTG 1525
||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1379 TTGATGAACTTCCTCAACTGGAGAATCTCAACTTATACAATGATCTCGGCAACACTAGTG 1438
Query 1526 ACCTTCCTTACAACATAAGTAACTTTCAATTCGATGACAACAAGCAGCAACAAGGAGAAG 1585
| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct 1439 AGCTTCCTTACAACATAAGTAACTTTCAATCCGATGACAACAAG-A--AACAAGGAGAAG 1495
Score = 250 bits (135), Expect = 4e-65
Identities = 162/175 (93%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 1651 GAAGACA-ATGGTGACTGGACCTTCGCGAACGTAAACCAGGCTCAATCTAATGGAGAAAC 1709
||||| | |||||||||||||||||| |||| ||||||||| |||||||||||||||| |
Sbjct 1492 GAAGA-AGATGGTGACTGGACCTTCGTGAACATAAACCAGGATCAATCTAATGGAGAATC 1550
Query 1710 ATCGAACACTATTGCTGCTCCGGAAACTAATCCTCCAATTTTCAACATGAACCCTAATCA 1769
|||||||||||||||| ||||||| |||||| |||||| ||||||||| |||||||||||
Sbjct 1551 ATCGAACACTATTGCTACTCCGGAGACTAATACTCCAAATTTCAACATTAACCCTAATCA 1610
Query 1770 GAATCAGGGACAAGATGTTCCAGAGTTTACCGATTGGTCGTTTTTGGATCCGCAG 1824
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1611 GAATCAGGGACAAGCTGTTCCAGAGTTTACCGATTGGTCGTTTTTGGATCAGCAG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5