BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325354
Length=2694
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07390.1 | Symbols: ATRBOHA, RBOHA | respiratory burst oxida... 4111 0.0
> AT5G07390.1 | Symbols: ATRBOHA, RBOHA | respiratory burst oxidase
homolog A | chr5:2335895-2339913 REVERSE LENGTH=3062
Length=3062
Score = 4111 bits (2226), Expect = 0.0
Identities = 2556/2714 (94%), Gaps = 28/2714 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGAAGTGAGTTTCAAAAGTTAGGATTCGAAAACGTTAGATACTACACAGAGACG 60
|||||||||||||| | ||||||||||| |||||| |||| ||||||||||||||| ||
Sbjct 189 ATGAATCGAAGTGAAATGCAAAAGTTAGGTTTCGAACACGTGAGATACTACACAGAGTCG 248
Query 61 CCGT---ACGGAGGACAGTCGTC-G-G--CGT--CGACG---AGCAGA-TATTACGGTGA 107
|||| || ||||| ||||||| | | ||| ||||| |||| | |||||||||||
Sbjct 249 CCGTACAACAGAGGAGAGTCGTCGGCGAACGTGGCGACGACAAGCA-ACTATTACGGTGA 307
Query 108 AGATGAACCATACGTTGAGATCACGCTTGATATCCACGAAGATTCTGTCTCCGTGTACGG 167
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 308 AGATGAACCATACGTGGAGATCACGCTAGATATCCACGACGATTCCGTCTCCGTGTACGG 367
Query 168 CATGAAGTCACCGGACCATCGAGGCGCCGGATCGATTTATGAGGATCAATCGCTTCTGAG 227
| ||||||||||| |||||||||| ||||| || | ||||||||||||||||||||| ||
Sbjct 368 CTTGAAGTCACCGAACCATCGAGGGGCCGGGTCTAATTATGAGGATCAATCGCTTCTCAG 427
Query 228 ACAAGGTCGTTCAGGGAGGAGTAACTCGGTATTGAAACGCTTGGCTTCTTCGGTTTCTAC 287
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 428 ACAAGGTCGTTCAGGGAGGAGTAACTCGGTTTTGAAACGCTTGGCTTCTTCTGTTTCCAC 487
Query 288 C-GAACTGAA-ACGAGTTGCTTCTTCCGTTTCGTCGTCTTCGGCAAGAAAACCACCGCGG 345
| ||| | || ||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 488 CGGAA-T-AACACGAGTTGCTTCTTCTGTTTCTTCGTCTTCCGCGAGAAAACCACCGCGG 545
Query 346 CCGCAGATAGCTAGGCTCCGCCGTTCGAAATCTAGAGCAGAGCAAGCTCTCAAAGGTCTC 405
|||||| | || | ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 546 CCGCAGCTGGCAAAGCTGCGCCGTTCGAAATCTAGAGCAGAGTTAGCTCTCAAAGGTCTT 605
Query 406 AAATTCATCACCAAGACTGATGGTGTCACTGGTTGGCCTGAAGTTGAGAAACGGTTTTAT 465
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 AAATTCATCACCAAAACTGATGGTGTCACTGGTTGGCCTGAGGTTGAGAAACGGTTTTAT 665
Query 466 GTGATTACAATGACTACGAACGGATTATTACACCGATCTAAATTCGGTGAATGTATAGGG 525
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 666 GTGATGACAATGACTACTAACGGATTATTACACCGATCTAGATTCGGTGAATGTATAGGG 725
Query 526 ATGAAATCGACGGAGTTTGCGTTGGCATTGTTCGATGCTTTAGCGAGGAGGGAGAACGTA 585
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 726 ATGAAATCGACAGAGTTTGCGTTGGCATTGTTCGATGCTTTAGCGAGGAGGGAAAACGTA 785
Query 586 AGCGGAGATTTAATAAACATGAATGAGCTTAAAGAGTTCTGGAAGCAGATCACTGATCAA 645
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 786 AGCGGAGATTCAATAAACATTAATGAGCTTAAAGAGTTCTGGAAGCAGATCACTGATCAA 845
Query 646 GATTTTGACTCGAGGCTACGAACTTTCTTCGCAATGGTCGATAAGGATTCGGATGGGCGG 705
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 846 GATTTTGATTCAAGGCTACGAACTTTCTTCGCCATGGTCGATAAGGATTCGGATGGGCGG 905
Query 706 TTGAATGAAGCAGAAGTAAGAGAGATTATAACTCTAAGTGCTTCTGCAAACGAGCTGGAT 765
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 906 TTGAATGAAGCCGAAGTAAGAGAGATTATAACTTTAAGTGCTTCTGCAAACGAGCTGGAT 965
Query 766 AACATTCGGAGACAAGCTGAAGAATATGCTGCTTTGATTATGGAAGAACTAGATCCTTAT 825
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 966 AACATTCGGAGACAAGCTGATGAATATGCTGCTTTAATTATGGAAGAACTAGATCCTTAT 1025
Query 826 CATTATGGGTACATCATGATAGAGAATCTCGAGATACTTCTATTGCAAGCGCCGATGCCG 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1026 CATTATGGGTACATCATGATAGAGAATCTCGAGATACTTCTATTGCAAGCGCCGATGCAG 1085
Query 886 GATGTGAGAGATGGGGAGAGTAAGAAGCTGAGCAAGATGCTAAGTCAGAATCTCATGGTT 945
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1086 GATGTGAGAGATGGAGAGGGTAAGAAGCTAAGCAAGATGCTAAGTCAGAATCTCATGGTT 1145
Query 946 CCGCAGAGTAGGAATCTTGGGGCTCGTTTTTGCAGAGGGATGAAGTATTTTTTGTTCGAT 1005
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1146 CCGCAGAGTAGGAATCTCGGGGCGCGTTTTTGCAGAGGGATGAAGTATTTTTTGTTTGAT 1205
Query 1006 AATTGGAAGAGAGTGTGGGTGATGGCTCTATGGATAGGTGCTATGGCGGGGTTGTTCACG 1065
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1206 AATTGGAAGAGAGTGTGGGTGATGGCTCTATGGATAGGTGCTATGGCGGGTTTGTTCACG 1265
Query 1066 TGGAAGTTTATGGAGTATCGAAAAAGATCCGCTTACCAAGTTATGGGAGTTTGTGTTTGT 1125
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1266 TGGAAGTTTATGGAGTATCGAAAAAGATCCGCTTACGAAGTCATGGGAGTTTGTGTTTGT 1325
Query 1126 ATAGCTAAAGGAGCTGCAGAGACGCTTAAACTAAACATGGCTATGATTTTGTTACCAGTT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 ATAGCTAAAGGAGCTGCAGAGACGCTTAAACTAAACATGGCTATGATTTTGTTACCAGTT 1385
Query 1186 TGTAGGAACACCATCACTTGGCTCCGGACCAAAACCAAGTTAAGTGCTATTGTTCCTTTC 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGTAGGAACACCATCACTTGGCTCCGGACCAAAACCAAGTTAAGTGCTATTGTTCCTTTC 1445
Query 1246 GATGACAGCCTCAATTTTCACAAGGTCATAGCAATAGGAATCTCAATTGGAGTAGGAATC 1305
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||
Sbjct 1446 GATGACAGCCTCAATTTTCACAAGGTCATAGCTATAGGAATTTCAGTTGGAGTTGGAATC 1505
Query 1306 CATGCTACATCTCACTTAGCCTGTGATTTCCCCCGGCTGATAGCTGCAGATGAAGA-CAA 1364
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1506 CATGCTACATCTCACTTAGCATGTGATTTTCCCCGGCTGATAGCTGCAGATGAAGATCA- 1564
Query 1365 GTATAAGCCAATGGA-AATGTATTTTGGGCCACAGACAAAGAGATATATGGACTTTGTGC 1423
|||| |||||||||| || |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1565 GTATGAGCCAATGGAGAA-GTATTTTGGGCCACAGACAAAGAGATATTTGGACTTTGTTC 1623
Query 1424 AATCGGTAGAAGGAGTTACCGGGATTGCAATGGTTATACTAATGACCATAGCCTTTACAT 1483
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1624 AATCGGTAGAAGGAGTTACCGGGATTGGAATGGTTGTACTAATGACCATAGCCTTTACAT 1683
Query 1484 TGGCTACTACATGGTTCAGACGTAATAAGCTCAACCTTCCTGGGCCACTGAAGAAAATAA 1543
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1684 TGGCTACAACATGGTTCAGACGTAATAAGCTCAACCTTCCTGGACCACTGAAGAAAATAA 1743
Query 1544 CAGGCTTCAATGCCTTTTGGTACTCTCACCACTTGTTTGTTATCGTCTACTCCCTTCTTG 1603
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1744 CAGGCTTCAATGCCTTCTGGTACTCTCACCACTTATTTGTTATCGTCTACTCGCTTCTTG 1803
Query 1604 TCGTTCACGGATTCTACGTATACCTCATCATCAAGCCATGGTACAAGAAAACGACATGGA 1663
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1804 TCGTTCATGGATTCTACGTATACCTCATCATCGAGCCATGGTACAAGAAAACGACATGGA 1863
Query 1664 TGTATTTGATGGTACCGGTGGTTCTTTACTTGTTTGAAAGGCTGATTCGTGCATTCAGGT 1723
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1864 TGTATTTGATGGTACCGGTGGTTCTTTACTTGTGTGAAAGGCTGATTCGTGCATTCAGGT 1923
Query 1724 CAAGCGTTGAGGCTGTTTCAGTACTAAAGGTTGCTGTGTTACCAGGGAATGTCTTGTCGC 1783
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1924 CAAGCGTCGAGGCTGTTTCAGTGCTAAAGGTTGCTGTGTTACCAGGGAATGTCTTGTCGC 1983
Query 1784 TTCACTTGTCAAGACCAACCAACTTCAGATACAAGAGCGGACAATACATGTATCTCAACT 1843
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1984 TTCACTTGTCAAGACCAAGCAACTTCAGATACAAGAGTGGACAATACATGTATCTCAACT 2043
Query 1844 GTTCTGCAGTTTCTACATTAGAATGGCATCCATTCTCAATTACCTCAGCTCCAGGAGATG 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 GTTCTGCAGTTTCTACATTAGAATGGCATCCATTCTCAATTACCTCAGCTCCAGGAGATG 2103
Query 1904 ACTACCTTAGTGTACACATCAGGGTTTTAGGAGATTGGACTAAGGAATTAAGATCTTTAT 1963
||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 2104 ACTACCTCAGTGTCCACATCAGGGTTTTAGGAGACTGGACTAAGCAATTAAGATCATTAT 2163
Query 1964 TCTCTGAGGTGTGTAAGCCACGCCCTCCTGATGAAAACAGACTGAACAGAGCCGACTCGA 2023
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2164 TCTCTGAGGTGTGCAAGCCACGCCCTCCTGATGAACACAGACTGAACAGAGCCGACTCGA 2223
Query 2024 GGGACTGGGATAACATTCCTAACTTTCCAAGAATCCTAATCGACGGTCCATATGGAGCAC 2083
| |||||||| |||| ||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 2224 AGCACTGGGATTACATCCCTGACTTTCCAAGAATCCTAATTGATGGTCCATATGGAGCAC 2283
Query 2084 CAGCACAAGACTACAAGAAGTTTGAAGTTCTTCTACTAGTGGGTCTAGGAATTGGTGCTA 2143
||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |
Sbjct 2284 CAGCACAAGACTACAAGAAGTTTGAAGTTGTTCTGCTAGTGGGTCTAGGAATCGGTGCCA 2343
Query 2144 CTCCAATGATCAGTATTGTGAAG-GACATAATCAATCACTTGAAAGGTGTAGAAGAAGGC 2202
|||| |||||||| || |||| | |||||||||||| |||||||||| || |||||||||
Sbjct 2344 CTCCGATGATCAGCATAGTGA-GTGACATAATCAATAACTTGAAAGGCGTGGAAGAAGGC 2402
Query 2203 AGTAACCGAAGACAGTCACCGATCCACAATATGATCACACCTCCTGTTTCTCCATCAAGA 2262
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2403 AGTAACCGAAGACAGTCACCGATCCATAATATGGTCACACCTCCTGTTTCTCCATCAAGA 2462
Query 2263 AAAAGTGAGACGTTCATAACCAAGAGAGCTTACTTCTACTGGGTCACAAGAGAGCAAGGG 2322
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2463 AAAAGTGAGACGTTCAGAACCAAGAGAGCTTACTTCTACTGGGTCACAAGAGAGCAGGGG 2522
Query 2323 TCGTTTGACTGGTTCAAGAACGTGATGGACGAAGTGACCGAAACAGACCGAAACAAA-GT 2381
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||
Sbjct 2523 TCGTTTGACTGGTTCAAGAACGTGATGGACGAAGTGACTGAAACAGACCGCAA-AAACGT 2581
Query 2382 GATTGAGCTGCATAATTACTGCACTAGCGTCTACGAGGAAGGAGACGCAAGGTCCGCACT 2441
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 2582 AATTGAGCTGCATAATTACTGCACCAGCGTTTACGAGGAAGGGGACGCGAGGTCTGCACT 2641
Query 2442 AATCACGATGCTCCAGTCTCTGAACCATGCTAAGCACGGAGTGGACGTTGTGTCAGGAAC 2501
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2642 TATCACGATGCTCCAGTCTCTAAACCATGCTAAGCATGGAGTGGACGTTGTGTCAGGAAC 2701
Query 2502 ACGTGTTATGTCCCATTTCGCTAGGCCAAACTGGAGAAGCGTTTTCAAAAGGATCGCTGT 2561
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2702 ACGTGTCATGTCCCATTTCGCTAGGCCAAACTGGAGAAGCGTTTTCAAAAGGATCGCTGT 2761
Query 2562 GAATCATCCCAAGACTAAAGTCGGAGTGTTTTATTGCGGAGCAGCTGGATTAGTGAAAGA 2621
||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2762 GAATCATCCTAAGACTAGAGTCGGAGTGTTTTATTGTGGAGCAGCTGGGTTAGTGAAAGA 2821
Query 2622 GTTAAGACACTTATCACTGGATTTCTCTCATAAGACCTCTACCAAGTTCA-CTTTCCATA 2680
|||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 2822 GTTACGACACTTATCACTGGATTTCTCTCATAAGACCTCCACCAAGTTCATCTT-CCATA 2880
Query 2681 AAGAGAATTTCTAA 2694
||||||||||||||
Sbjct 2881 AAGAGAATTTCTAA 2894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133795236981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5