BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325356
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69940.1 | Symbols: ATPPME1, PPME1 | Pectin lyase-like super... 1773 0.0
AT5G07410.1 | Symbols: | Pectin lyase-like superfamily protein... 1757 0.0
> AT1G69940.1 | Symbols: ATPPME1, PPME1 | Pectin lyase-like superfamily
protein | chr1:26343369-26345058 REVERSE LENGTH=1353
Length=1353
Score = 1773 bits (960), Expect = 0.0
Identities = 1044/1086 (96%), Gaps = 0/1086 (0%)
Strand=Plus/Plus
Query 1 ATGGGATACACAAATGTGTCCATTTTATTAGGCCTGTTGGTGGTCTTTGTTTCACCGGTG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 88 ATGGGATACACAAATGTGTCCATTTTATTAGGCCTGTTGATGGTCTTTGTTACACCGATG 147
Query 61 GTGTTCGCAGATGATGTGACACCAATCCCAGAGGCCAAACCCCAAGTGGCGCAGTGGTTC 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 148 GTGTTCGCAGATGATGTGACACCAATCCCAGAGGGCAAACCCCAAGTGGCGCAGTGGTTC 207
Query 121 AAGGCCAACGTCGCTCCATTGGCTCAACGTAAAGGCTTAGATCCAGCTCTCGTTGCTGCT 180
|| |||||||| | |||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 208 AATGCCAACGTTGGTCCATTGGCTCAACGTAAAGGCTTAGATCCTGCTCTTGTAGCTGCT 267
Query 181 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGAGGTGAATTCAAAACACTAACG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 268 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGTGGTGAATTCAAAACACTAACG 327
Query 241 GACGCAATAAAGAGCGTTCCTGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GACGCAATAAAGAGCGTTCCTGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCCT 387
Query 301 GGGGAGTACAGAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 360
|| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GGTGAATACAAAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 447
Query 361 CAACCCGGTGCCATGCCTGTTATCACCTACGACGGTACCGCCGCCAAGTATGGAACAGTT 420
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 448 CAACCCAATGCCATGCCTGTTATCACCTATGACGGTACCGCCGCCAAGTATGGAACCGTT 507
Query 421 GATAGCGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTTGTTAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 508 GATAGCGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTCGTTAAG 567
Query 481 AATACTGCACCGGCGCCAGATGGTAAAACAAAGGGAGCACAAGCCTTATCTATGAGAATC 540
|| ||||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 568 AACACTGCGCCGGCACCAGATGGTAAAACTAAGGGAGCACAAGCTTTATCCATGAGAATC 627
Query 541 TCCGGAAACTTTGCTGCTTTTTACAACTGCAAATTCTACGGTTTCCAAGACACAATCTGT 600
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 628 TCCGGAAATTTTGCTGCTTTCTACAACTGCAAATTCTACGGTTTCCAAGACACAATCTGT 687
Query 601 GACGATACCGGAAACCATTTCTTCAAGGATTGTTACGTCGAAGGAACATTCGATTTCATC 660
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 688 GACGATACAGGAAACCATTTCTTCAAGGATTGTTACGTTGAAGGAACATTCGATTTCATC 747
Query 661 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGATGGTATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 748 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGACGGTATT 807
Query 721 AGAGTGATCGCAGCGCATGCAGGAAAGAGCGCAGAAGAGAAGAGCGGGTACTCTTTCGTG 780
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 808 AGAGTGATAGCAGCGCATGCAGGAAAGAGCGCAGAAGAGAAGAGTGGATACTCTTTCGTG 867
Query 781 CACTGCAAGGTGACTGGAACCGGTGGTGGAATCTATTTGGGAAGAGCATGGATGAGTCAC 840
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 868 CACTGCAAGGTGACTGGAACCGGTGGAGGAATTTATTTGGGAAGAGCATGGATGAGCCAC 927
Query 841 CCTAAGGTTGTCTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CCTAAGGTTGTTTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 987
Query 901 GAAAACAAGACTCCCGCACATGACAGGACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 960
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 988 GAAAACAAGACTCCCGCACATGACAAAACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 1047
Query 961 CCAGGATCACACAAAGCCAAGAGAGTGCCATTCACACAAGACATTGACGACAAAGAAGCT 1020
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1048 CCAGGATCACACAAAGCCAAGAGAGTACCATTCACACAAGACATTGACGACAAAGAAGCT 1107
Query 1021 AACCGTTTCCTTTCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCAGCT 1080
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1108 AACCGTTTCCTATCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCCGCT 1167
Query 1081 TTGTAA 1086
||||||
Sbjct 1168 TTGTAA 1173
> AT5G07410.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:2345758-2347497 FORWARD LENGTH=1401
Length=1401
Score = 1757 bits (951), Expect = 0.0
Identities = 1041/1086 (96%), Gaps = 0/1086 (0%)
Strand=Plus/Plus
Query 1 ATGGGATACACAAATGTGTCCATTTTATTAGGCCTGTTGGTGGTCTTTGTTTCACCGGTG 60
||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 95 ATGAGATACACAAATGTGTCCATTTTATTAGGCATGTTGGTGATCTTTGTTTCACCAATG 154
Query 61 GTGTTCGCAGATGATGTGACACCAATCCCAGAGGCCAAACCCCAAGTGGCGCAGTGGTTC 120
||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 155 GTGTTCGCAGATGATTTGACACCAATCCCAGAGGGCAAACCCCAAGTGGTGCAGTGGTTC 214
Query 121 AAGGCCAACGTCGCTCCATTGGCTCAACGTAAAGGCTTAGATCCAGCTCTCGTTGCTGCT 180
|| || |||| | |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 215 AATACCCACGTTGGTCCATTGGCTCAACGTAAAGGCTTAGATCCTGCTCTCGTAGCTGCT 274
Query 181 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGAGGTGAATTCAAAACACTAACG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GAGGCTGCTCCACGTATCATCAACGTGAATCCAAAGGGAGGTGAATTCAAAACACTAACA 334
Query 241 GACGCAATAAAGAGCGTTCCTGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCCT 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 335 GACGCAATAAAGAGCGTTCCCGCAGGGAACACAAAGCGGGTGATCATAAAGATGGCTCAT 394
Query 301 GGGGAGTACAGAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GGTGAGTACAGAGAGAAGGTCACTATCGACAGGAACAAACCCTTCATTACATTGATGGGA 454
Query 361 CAACCCGGTGCCATGCCTGTTATCACCTACGACGGTACCGCCGCCAAGTATGGAACAGTT 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 CAACCCAATGCCATGCCTGTTATCACCTACGACGGTACCGCCGCCAAGTATGGAACCGTT 514
Query 421 GATAGCGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTTGTTAAG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 515 GATAGTGCCTCTCTCATTATCTTATCCGACTATTTCATGGCCGTTAACATCGTCGTTAAG 574
Query 481 AATACTGCACCGGCGCCAGATGGTAAAACAAAGGGAGCACAAGCCTTATCTATGAGAATC 540
|| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 575 AACACTGCACCGGCACCAGATGGTAAAACTAAGGGAGCACAAGCCTTATCCATGAGAATC 634
Query 541 TCCGGAAACTTTGCTGCTTTTTACAACTGCAAATTCTACGGTTTCCAAGACACAATCTGT 600
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 635 TCCGGAAACTTTGCTGCTTTCTACAACTGCAAATTCTACGGTTTCCAAGATACAATCTGT 694
Query 601 GACGATACCGGAAACCATTTCTTCAAGGATTGTTACGTCGAAGGAACATTCGATTTCATC 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GATGATACCGGAAACCATTTCTTCAAGGATTGTTACGTCGAAGGAACATTCGATTTCATC 754
Query 661 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGATGGTATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 755 TTCGGAAGTGGAACCTCTATGTACTTGGGAACACAATTGCACGTGGTTGGAGACGGTATT 814
Query 721 AGAGTGATCGCAGCGCATGCAGGAAAGAGCGCAGAAGAGAAGAGCGGGTACTCTTTCGTG 780
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 815 AGAGTGATCGCAGCGCATGCAGGAAAGAGCGCAGAAGAAAAGAGTGGATACTCTTTCGTG 874
Query 781 CACTGCAAGGTGACTGGAACCGGTGGTGGAATCTATTTGGGAAGAGCATGGATGAGTCAC 840
|||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||
Sbjct 875 CACTGCAAGGTGACTGGAACTGGAGGAGGAATCTATTTGGGAAGAGCATGGATGAGCCAC 934
Query 841 CCTAAGGTTGTCTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 CCTAAGGTTGTCTATGCCTACACCGAGATGACCAGCGTTGTCAACCCCACCGGATGGCAA 994
Query 901 GAAAACAAGACTCCCGCACATGACAGGACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 995 GAAAACAAGACTCCCGCACATGACAAGACCGTGTTCTACGGAGAGTACAAGTGTTCAGGA 1054
Query 961 CCAGGATCACACAAAGCCAAGAGAGTGCCATTCACACAAGACATTGACGACAAAGAAGCT 1020
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1055 CCAGGGTCACACAAAGCCAAGAGAGTGCCATTCACACAAGACATCGACGACAAAGAAGCT 1114
Query 1021 AACCGTTTCCTTTCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCAGCT 1080
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1115 AACTGTTTCCTATCCCTCGGCTACATCCAAGGATCCAAGTGGCTTCTCCCACCACCCGCT 1174
Query 1081 TTGTAA 1086
||||||
Sbjct 1175 TTGTAA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5