BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325378
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-241... 2087 0.0
> AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-2414711
FORWARD LENGTH=2024
Length=2024
Score = 2087 bits (1130), Expect = 0.0
Identities = 1339/1441 (93%), Gaps = 9/1441 (1%)
Strand=Plus/Plus
Query 1 ATGCAGCTCTACGCTGTCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGG 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 ATGC-GCTCTACGCTATCCAGTTCCATCTTTTTGTTACTTGTGTCTTGTTTCTCAGCCGG 459
Query 61 GAGGGATTCCGCCGCGCTTGCTTGCGGGCTAACATTAAACGTGATGGTCCTGGATCAGAG 120
|||||||| || |||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 460 GAGGGATTTCGGCGCGCTTGCTTGCGGGCTGGCACCAAACGTGATGGTCCTGAATCAGAG 519
Query 121 GAAAATGTCACTAAGCTATTGAAAGTAGCATGGCTGACAGTACCACTCGGAATAGCTATT 180
|||||||| |||| | ||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 520 GAAAATGTGACTAGGATATTGAAAGTAGCATGGGTGACAGTTCCACTCGGGATAGCTATT 579
Query 181 ACTATTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACACATAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 580 ACTATTGCAGCATGCATTTTTGTGTTATGGTGGCAGAACCTTAGTTACTCCGACCCATAT 639
Query 241 GCACAGGCTATCTTGATTCACGGATTCGCATGTCTACTTGAGCTAATGGCTGAGCCTTTG 300
||||||||||||| |||||||||||| |||||| |||| ||||| |||||||| ||||||
Sbjct 640 GCACAGGCTATCTGGATTCACGGATTTGCATGTGTACTGGAGCTTATGGCTGAACCTTTG 699
Query 301 TATATTCTCTCTCAGACACTGGTGAAGCTAGAGTTGCGACTCTTTGTTGAGATTGCCGCT 360
||||| |||||||||||| || |||| ||| ||||||||||| ||||||||| | |||
Sbjct 700 TATATCCTCTCTCAGACATTGCTGAAACTACAGTTGCGACTCATTGTTGAGACCGTAGCT 759
Query 361 ACATTTGCACGCTGTTTAACTCTGTGGTCTCTCATAGTCAACCAAACCAACATGGAAAAA 420
||||| ||||| ||| ||||||||| |||||| |||||| ||||||||||||||||||
Sbjct 760 ACATTGGCACGGTGTGTAACTCTGTACTCTCTCCTAGTCATGCAAACCAACATGGAAAAA 819
Query 421 G-GAATAGTCTTCGCACTGTCACAAGTTGCTTATGGAGGTTCCTTGTTTCTTGGCTACTG 479
| | ||| |||||||| ||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 820 GTG-ATAATCTTCGCATTGTCACAAGTTGCATATGGAGGTTCCTTGTTTATTGGGTACTG 878
Query 480 GGCTTATTTTCTCATTTGTGGTGTTCT-CAGAAGTTCAG-ATCTCTTTCCTTTCAGACCT 537
||| ||||||||||| ||||||||| | ||||||||| | ||||||||||||||||||||
Sbjct 879 GGCCTATTTTCTCATCTGTGGTGTT-TACAGAAGTTC-GAATCTCTTTCCTTTCAGACCT 936
Query 538 GGGAACTTCATGGATTTCGATAACAAGCTCTCGAACATGTGTATGCTGTTTACTTTTCAG 597
||||||||||||||||| ||||| | |||||||| ||||||| ||||||||||||||||
Sbjct 937 GGGAACTTCATGGATTTTGATAATGATCTCTCGAAGATGTGTAAGCTGTTTACTTTTCAG 996
Query 598 TCCTTTCGAAAGTTGATCCTTCAAGAAGGTGAAAAATTGGTCCTTGTATGGTTAGATACA 657
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 997 TCCTTCCGAAAGTTAATCCTTCAAGAAGGTGAAAAATTGGTCCTGGTATGGTTAGATACA 1056
Query 658 CCTTATAATCAGGCGGTATATGGGATCGTCGACAAACTAGGTAGTTTAGTTGTACGCATG 717
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1057 CCTTATAACCAGGCTGTATATGGGATAGTCGACAAACTAGGTAGTTTAGTTGTACGCATG 1116
Query 718 GTGTTTTTTCCCTTTGAAGAAACTTCATACACTATATTTGCCAGGTTCGCATCAGGTGAT 777
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1117 GTGTTTCTCCCCTTTGAAGAAAGTTCATACACTATATTTGCCAGGTTCGCATCAGGTGAT 1176
Query 778 TATCAGGAAAGGAAAAAGAAACTCGGAATTGGCTTGACTGAGGCCTTGAAGCTTGTGATA 837
|||||||||||||| |||||||| |||||| |||||| | ||| |||||||||||||||
Sbjct 1177 TATCAGGAAAGGAATAAGAAACTTGGAATTTACTTGACCGTGGCGTTGAAGCTTGTGATA 1236
Query 838 TTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCATACTCTCTCATCAGATTG 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1237 TTAATAGGTCTTATATTTATGGCATTTGGCCCGAGTTATTCGTACTCTCTCATCAGATTG 1296
Query 898 TTGTATGGTGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCTTACAGTTTTATTGTCTC 957
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1297 TTGTATGGCGAAAAATGGAGCGATGGAGAAGCTTCCTTGGCCCTACAGTTTTATTGTCTC 1356
Query 958 TACATCATCGTCCTGGCCATGAACGGAACCTCCGAAGCATTTTTACATGCAGTTGGAACA 1017
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1357 TACATCATTGTCCTAGCCATGAACGGGACCTCGGAAGCATTTTTACATGCAGTTGGAACA 1416
Query 1018 GAGAATGAACTGAAGCGCTCAAACGACATGTTGCTTGTATTTTCATTGATTTACGTCGCG 1077
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1417 AAGAATGAACTGGAGCGCTCAAACGACATGTTGCTTATATTTTCATTGATTTACGTCGCA 1476
Query 1078 TTAAATATTCTGCTTATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAATTCCTTG 1137
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TTAAATATTCTACTGATAAGATCTGCCGGAGCAATAGGTTTAATCATGGCGAATTCCTTG 1536
Query 1138 AATATGATATTTAGGATCATCTATTCAGGGAAATTCATCCAGCATTACTTCCAGGGCACT 1197
|||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1537 AATATGATTTTTAGGATCATCTATTCAGGGAGATTCATCCAACGTTACTTCCAGGGCACT 1596
Query 1198 TCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCTTTCGAGC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 TCTTCATTCTCGTTCCGAAAATGCTTTCCTTTAGGTTGGCAAATTCTTATCCTTTCGAGC 1656
Query 1258 GTAATCACTCTCATCTCAGAGAAAACCATCCTCGATCGTAAGAA-TTTCTGGGAAACATT 1316
||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1657 ATAATCACTCTCATCTCAGAGAAAACCATCCTAGATCGTAAGAACTTT-TGGGAAACATT 1715
Query 1317 TCCTCTCCATTTCGCCATCGGTTTCATCTGCTTCTGTCTTTCGGCCATTGTCATATACCG 1376
||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1716 TCCCCTCCATTTCGGCATCGGTGTCATCTGCTTCTGTCTTTCGGCCATTGTCATATACCG 1775
Query 1377 GCGTGAGAGGGTGTTCATCAAAAGAATCATACATTTCAGGGATTATAATCACGACGACTG 1436
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 1776 GCGTGAGAGGGTGTTCATCAAAAGAATCAAACGTTTCAGGGATTACAATCACGACGACTG 1835
Query 1437 A 1437
|
Sbjct 1836 A 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5