BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325380
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07670.1 | Symbols: | RNI-like superfamily protein | chr5:2... 2338 0.0
> AT5G07670.1 | Symbols: | RNI-like superfamily protein | chr5:2430146-2432196
FORWARD LENGTH=1837
Length=1837
Score = 2338 bits (1266), Expect = 0.0
Identities = 1384/1440 (96%), Gaps = 12/1440 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTATAATACGGGGAAGAAGGAGAGTAGTCCAGTTTCGCCATTGAAGAAGCGACGA 60
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATGTCTTATAATAC-GGG--GAAGGAGAGTAGTCCAGTTTCGCCATTGAAGAAGCGACGA 332
Query 61 GCGAGCTGGTCGGAACTTTGGGTTAACCATCACCAGTTATTGTCTTCTTCGCCGCTTGAT 120
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 333 GCAAGCTGGTCGGAACTTTGGGTTAACCATCACCACTTATTGTCTTCTTCGCCCCTTGAT 392
Query 121 TTTGCCGCAAAGTTTCAGTCTTTGACTCCTCCAATCTCCAAATCCAAAACCCTACTTCCT 180
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 393 TTAGCCGCAAAGTTTCAGTCTTTGACTCCTCCTATCTCCAAATCCAAAACCCTACTTCCT 452
Query 181 GATTTCACGCTTCTCTTACCTGACCTCATTCTCATCAGAGTCATTGAGAAAATCCCTAAA 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 453 GATTTCACGCTTCTCTTACCTGACCTCATTCTCATCAGAGTCATTCAGAAAATCCCTAAT 512
Query 241 TCTCAACGGAAAAATCTCTCTTTGGTTTGTAAGAGATGGTTTAAACTCCATGGTCGTCTT 300
|||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||
Sbjct 513 TCTCAACGGAAAAATCTCTCCTTGGTATGCAAGAGATGGTTTAGACTCCATGGTCGTCTT 572
Query 301 GTACGGTCTTTTAAGGTTTCGGATTGGGAATTTCTAGCGTCTGGTCGGCTGATTTCGAGG 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 573 GTACGGTCTTTTAAGGTTTCGGATTGGGAATTTCTATCGTCTGGTCGGCTGATTTCGAGG 632
Query 361 TTTCCCAATCTGGACACTGTTGATTTGGTCAGTGGGTGTTTAATTTCGCCGCCAAATTCA 420
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 633 TTTCCCAATCTGGAGACTGTTGATTTGGTCAGTGGGTGTTTAATTTCGCCGCCAAATTTA 692
Query 421 GGTATTTTAGTTAACCACAGGATAGTTTCGTTTACTGTTGGTGTAGGGTCTTATCAGAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GGTATTTTAGTTAACCACAGGATAGTTTCGTTTACTGTTGGTGTAGGGTCTTATCAGAGT 752
Query 481 TGGAGTTTCTTTGAGGAGAATTTGTTGTCTGTTG-ATATAGTTGAGAGAGGGCTTAAAGC 539
|||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 753 TGGAGTTTCTTTGAGGAGAATTTGTTGTCTGTTGAAT-TAGTTGAGAGAGGGCTAAAAGC 811
Query 540 TCTTGCTGGTGGTTGCTCTAATCTCCGGAAACTCGTAGTGACCAATACTAGTGAATTAGG 599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 812 ACTTGCTGGTGGTTGCTCTAATCTCCGGAAACTCGTAGTGACGAATACTAGTGAATTAGG 871
Query 600 GTTGTTGAATGTAGCTGAAGAGTGTTCCAGGTTGCAAGAACTCGAATTGCACAAGTGTTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GTTGTTGAATGTAGCTGAAGAGTGTTCCAGGTTGCAAGAACTCGAATTGCACAAGTGTTC 931
Query 660 TGATAGTGTTTTGCTTGGCATTGGTGCGTTTGAGAATCTGCAGATCTTGAGATTGGTTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TGATAGTGTTTTGCTTGGCATTGGTGCGTTTGAGAATCTGCAGATCTTGAGATTGGTTGG 991
Query 720 GAATGTCGATGGTTTGTATAACTCTTTGGTTTCGGATATCGGATTGATGATTTTGGCTCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GAATGTCGATGGTTTGTATAACTCTTTGGTTTCGGATATCGGATTGATGATTTTGGCTCA 1051
Query 780 AGGGTGCAAGAGACTGGTAAAGCTTGAACTCGTTGGATGCGAGGGAGGATTTGACGGGAT 839
|||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 1052 AGGGTGTAAGAGACTGGTGAAGCTTGAGCTTGTTGGATGTGAGGGAGGATTTGACGGGAT 1111
Query 840 TAAAGAGATAGGTGAGTGTTGTCAAATGCTTGAGGAACTCACTCTTTGCGATCATAAGAT 899
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1112 TAAAGAGATAGGTGAGTGTTGTCAAATGCTTGAGGAACTCACTGTTTGTGATAATAAGAT 1171
Query 900 GGAGTCGGGTTGGCTTGGAGGTCTTCGATATTGTGAGAATCTCAAGACGCTGAAACTCGT 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1172 GGAGTCGGGTTGGCTTGGAGGTCTTCGATATTGTGAGAATCTCAAGACTCTGAAACTCGT 1231
Query 960 GTCTTGTAAAAAGATCGATAATGATCCAGATGAGTGCTTGAGTTGTTGTTGTTGTCCTGC 1019
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1232 TTCTTGTAAAAAGATCGATAATGATCCAGATGAGTCCTTGAGTTGTTGTTGT---CCTGC 1288
Query 1020 TCTCGAGCGATTACACTTGGAGAAGTGTCAATTAAGAGATAAGAATACCTTAAAGGCTTT 1079
|||||||||||| || |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1289 TCTCGAGCGATTGCAGTTGGAGAAGTGTCAGTTAAGAGATAAGAATACCGTAAAGGCTTT 1348
Query 1080 GTTTAAGATGTGTGAAGCAGCGAGAGAGATTGTTTTCCAAGATTGTTGGGGATTGGATAA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GTTTAAAATGTGTGAAGCAGCGAGAGAGATTGTTTTCCAAGATTGTTGGGGATTGGATAA 1408
Query 1140 TGATATATTCAGCTTGGCATTGGCTTGCGGGAGAGTGAAGCT-TCTGTATCTAGAAGGAT 1198
||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||
Sbjct 1409 TGATATATTCAGCTTGGCAATGGCTTTCGGGAGAGTGAAGCTGT-TGTATCTAGAAGGAT 1467
Query 1199 GCTCATTGCTAACAACATCATGTCTAGAATCCGTGATTCTACATTGGCACGAGCTCGAAC 1258
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GCTCATTGCTAACAACATCAGGTCTAGAATCCGTGATTCTACATTGGCACGAGCTCGAAC 1527
Query 1259 ATCTGAAAGTGGTTTCATGCAAGAACATAAAAGATTCGGAAGTCTCTCCGTCGCTGTCTG 1318
|||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1528 ATCTGAAAGTAGTTTCATGCAAGAACATAAAAGATTCAGAAGTCTCTCCTTCGCTGTCAG 1587
Query 1319 CTCTGTTCTCAGCTTTAGTAGAATTGCAGTGGAGACCAGACACCAGATCCCATCTCTCTT 1378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 CTCTGTTCTCAGCATTAGTAGAATTGCAGTGGAGACCAGACACCAGATCCCATCTCTCTT 1647
Query 1379 CAAGCCTTACAGGGACCGGAATTGGGGGGAAAGGCGG-AAAGTTTTTCAAGAAAACATGA 1437
||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1648 CAAGCCTTACAGGGACCGGAATTGGGGAAAAAGGTGGGAAA-TTTTTCAAGAAAACATGA 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5