BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325399
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07930.3 | Symbols: MCT2 | MEI2 C-terminal RRM only like 2 |... 924 0.0
> AT5G07930.3 | Symbols: MCT2 | MEI2 C-terminal RRM only like 2
| chr5:2530834-2532742 FORWARD LENGTH=1130
Length=1130
Score = 924 bits (500), Expect = 0.0
Identities = 735/841 (87%), Gaps = 45/841 (5%)
Strand=Plus/Plus
Query 1 ATGGCTTTTTCCAATGATTCAGCTCCGGAGAACAACAACGTCTCCGTCGTAGTTAGACAA 60
||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 32 ATGGCTTCTTCCGATGATCCAGCTCCGGAGAACAACCACGTCTCCGTCTTAGCTAGACAA 91
Query 61 CCTCTACACCCACCCATACCTTTTTTCTTTCCTCACACTCTTTCTCCTCGTACTCACTAC 120
||| | ||||||| | || ||||||||||||||||| || ||||||||||||| |||||
Sbjct 92 GCTCGAAACCCACCGACACATTTTTTCTTTCCTCACAATCCTTCTCCTCGTACTTACTAC 151
Query 121 TTCTCGGCGCCACCACAGATTTACTTCATCTCCGACATAAATCT--C-CCTCCTCCATCA 177
||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||
Sbjct 152 TTCTCGGCGCCACCACAGATTTATTTCATCTCCGACATATATCTCCCTCCTCCTCCATCA 211
Query 178 ATATGGGTGTATTATCCTCTTTGGTATATAAACTCTAACCCTAACCG-GTATGAGTCAAC 236
||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| ||
Sbjct 212 ATATGGGTGTATTATCCTCTTTGGTATATTAACCCTAACCCTAA-TGTATATGAGTCTAC 270
Query 237 ACAAGAACTTCCTCAACCCTACTCTCCAACCCCTAGCCAAGAGCTCATGACTCTTCCCCC 296
||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||
Sbjct 271 ACAAGAACTTCCTCAACGTTACTCTCCAAACCCTAGCCAAGAG---ATGACTCTTCCACC 327
Query 297 GACTAGTAGTAGAAGAGTTTTTGGCCGGAGAAGTCACGGTCGATGTGAGAAGGTGACATG 356
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 328 GACTAGTAGTAGAAGAGTTTTTGGCCGGAGAAGTTACGAACTATGTGAGAAGGTGACATG 387
Query 357 GAGAAGAAGTATCAAGCCGGAAGTTGAATCCAAGGGCGATCACATCACAACCAACAGG-- 414
||| | ||||||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 388 GAGGACAAGTATCAAGCCGGAAGTTGAATCCAACGGTGATCACATCACAACCGTCATGCT 447
Query 415 --G---TAC-CC-AACCGATACACGAGAGAGATGATGATTGAGTACATGGATAAGCACTG 467
| || || ||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 448 TCGCAATATACCGAACCGATACACGAGAGAGATGATGATTCAGTTCATGGATAAGCATTG 507
Query 468 CGAAGAAGCCAATATAAGTGGGAAAAATGAAGAATTTACAATCTCTGCTTATGATTTCAT 527
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 508 CGAAGAAGCCAATAAAAGTGGGAAAAATGAAGAGTTTACAATCTCTGCTTATGATTTTAT 567
Query 528 TTATCTTCCGATAGACTTTAGGACTACAATGAACAAAGGGTATGCTTTCGTGAACTTCAC 587
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TTACCTTCCGATAGACTTTAGGACTACAATGAACAAAGGGTATGCTTTCGTGAACTTCAC 627
Query 588 AAAGGCAGAAGCAGTGACGAAGTTTAAGGCTGCTTGCAACCACAAGCCGTGGTGCCATTT 647
||| ||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 628 AAATGCAAAAGCAGTGTCCAAGTTTAAGGCTGCTTGCAACAACAAGCCGTGGTGCCATTT 687
Query 648 TTACTCaaaaaaaGAA---G-G----C--A----A-A-----G---A-TGAGCTGGTGAA 683
||||||||||||||| | | | | | | | | ||||||||||||
Sbjct 688 CTACTCAAAAAAAGAACTTGAGATTACTTATGCTAGAATTCAGGCTAATGAGCTGGTGAA 747
Query 684 ACGTTTCCAGCAAATGACCTATCCGGCTGAGGCATACAGTGCGCTATGTTTCAGCCCAGC 743
|||||||||||| ||||| ||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 748 ACGTTTCCAGCATATGACATATCCGGAGGAGGCCTACAGTGCGGTATGTTTCAGCCCAGC 807
Query 744 TCGT-GACGGAGGGGATA-ATACAGTTCAAACCACAATGGTCGGTAAATGTACCGAACCA 801
|||| | ||||||| | | ||||||||||||||||||||||||||||||| | ||||||
Sbjct 808 TCGTAG-CGGAGGGAA-AGATACAGTTCAAACCACAATGGTCGGTAAATGCAATGAACCA 865
Query 802 G 802
|
Sbjct 866 G 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5