BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325400 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1301 0.0 > AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136 REVERSE LENGTH=1247 Length=1247 Score = 1301 bits (704), Expect = 0.0 Identities = 791/834 (95%), Gaps = 2/834 (0%) Strand=Plus/Plus Query 31 TCTCCGGCGAGTTTATCATCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 90 ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 168 TCTCCGGGGAGTTTTTCGTCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 227 Query 91 AGGAATCAGTGGTCTAAACTGTCGAATTGTCGACAACAGTGGATCGTCGCTTGTTCTGCG 150 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 228 AGGAACCAGTGGTCTAACCTGTCGAATTGTCGGCAACAGTGGATCGTCGCTTGTTCTGCG 287 Query 151 GGAAGATCTCACGCTACTTCGCTCGTCAATTCGTATTTATCTCAAAAGTATATGCCAATG 210 ||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||| Sbjct 288 GGAAGATCTCACGCTACTTTGCTAGTCAATTCGTATCTGTCACAAAAGTATATGCCAATG 347 Query 211 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATTAAGAAGAAAGCTTTGAAGAAGCTG 270 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407 Query 271 TTTAAGCAACAGAGTTCCTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 330 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467 Query 331 GTTGTTGTTGAGATGGTATATGCAAGCAGATCTCTGAGATGTTATACGAAACTAG-GTAC 389 |||||||||||||||||| ||||||||||||||||||||||||| ||||| || | |||| Sbjct 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCT-GAGTAC 526 Query 390 CGGGTCACTTGTACAGTTCTCTGGCTCTAAGGAAGATTCAAGTGATGCTGGAGATTGTGG 449 |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| || Sbjct 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586 Query 450 TGGCATCCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGGGGAGCT 509 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646 Query 510 TGTGGAAATGTTCAAACGCGAAGTAATGGTAAAGAGATTGCTCTTAATGGAACTGATCTC 569 |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGCTCATAATGGAACTGATCTC 706 Query 570 TTTAAGCACTGAAGTTCCTCAACCCGTCAACAACAGTTGGTCAGATGAGCTTTACCATGG 629 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 707 TTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGTCAGATGAGCTTTACCATGG 766 Query 630 GGAATTTGATCATCTCACCAAATGTTCTTTATATTCCATGGAAGTAGCTGAGCCAGTTCT 689 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 767 AGAATTTGATCATCTCACCAAATGTTCTTTATATTCTATGGAAGTAGCTAAGCCAGTTCT 826 Query 690 CCCCAGAGTGAAAGAAAATAATCTCGGTATTTCTTCTATATCACAAACCAACCAGCCAAC 749 ||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 827 CCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCAACCAGCCAAC 886 Query 750 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAGGTAAACATTGACACTCA 809 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 887 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAAGTAAACATCGACACTCA 946 Query 810 TAGGGTGGATGAGATATTAGCTTTGGTCGGGGAAGAAACTAGAGTCACCTTCTA 863 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 947 TAGGGTGGATGAGATATTAGCTTTGGTTGGGGAAGAAATTAGAGTCACCTTCTA 1000 Score = 54.7 bits (29), Expect = 1e-06 Identities = 33/35 (94%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1 ATGAGTGTCTCGCAGTTTCCGCCGCCTGCTTCTCC 35 ||||| |||||||||||||||||||||||||||| Sbjct 90 ATGAGCATCTCGCAGTTTCCGCCGCCTGCTTCTCC 124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5