BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325400
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1301 0.0
> AT5G07950.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136
REVERSE LENGTH=1247
Length=1247
Score = 1301 bits (704), Expect = 0.0
Identities = 791/834 (95%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 31 TCTCCGGCGAGTTTATCATCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 90
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TCTCCGGGGAGTTTTTCGTCATCGATGAGGCTATGGAGACCAGCTGCTCAGCGGAATCTT 227
Query 91 AGGAATCAGTGGTCTAAACTGTCGAATTGTCGACAACAGTGGATCGTCGCTTGTTCTGCG 150
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 228 AGGAACCAGTGGTCTAACCTGTCGAATTGTCGGCAACAGTGGATCGTCGCTTGTTCTGCG 287
Query 151 GGAAGATCTCACGCTACTTCGCTCGTCAATTCGTATTTATCTCAAAAGTATATGCCAATG 210
||||||||||||||||||| ||| |||||||||||| | || ||||||||||||||||||
Sbjct 288 GGAAGATCTCACGCTACTTTGCTAGTCAATTCGTATCTGTCACAAAAGTATATGCCAATG 347
Query 211 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATTAAGAAGAAAGCTTTGAAGAAGCTG 270
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 348 ATGGAGCTTGGTGTGTTGAGTGACATGTTTGATATCGACAAGAAAGCTTTGAAGAAGCTG 407
Query 271 TTTAAGCAACAGAGTTCCTATCGAATCAAGCTTTTATCGTCGTACAAGGAAATGGTAGCT 330
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 408 TTTACGCAACAGAGTTCCTATCGAATCAAGCTTTTATCTTCGTACAAGGAAATGGTAGCT 467
Query 331 GTTGTTGTTGAGATGGTATATGCAAGCAGATCTCTGAGATGTTATACGAAACTAG-GTAC 389
|||||||||||||||||| ||||||||||||||||||||||||| ||||| || | ||||
Sbjct 468 GTTGTTGTTGAGATGGTAAATGCAAGCAGATCTCTGAGATGTTACACGAAGCT-GAGTAC 526
Query 390 CGGGTCACTTGTACAGTTCTCTGGCTCTAAGGAAGATTCAAGTGATGCTGGAGATTGTGG 449
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 527 CGGGTCACTTATACAGTTCTCTGGCACTAAGGAAGATTCAAATGATGCTGGAGATTGCGG 586
Query 450 TGGCATCCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGGGGAGCT 509
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 587 TGGCATTCCTGTGTTTAATTTTTGGAATGTCTCTGCATTTGAGAAGATGGCTGAGGAGCT 646
Query 510 TGTGGAAATGTTCAAACGCGAAGTAATGGTAAAGAGATTGCTCTTAATGGAACTGATCTC 569
|||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 647 TGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGCTCATAATGGAACTGATCTC 706
Query 570 TTTAAGCACTGAAGTTCCTCAACCCGTCAACAACAGTTGGTCAGATGAGCTTTACCATGG 629
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 707 TTTAAGCACTGAAGTTCCTCAACCCATCAACAACAGTTGGTCAGATGAGCTTTACCATGG 766
Query 630 GGAATTTGATCATCTCACCAAATGTTCTTTATATTCCATGGAAGTAGCTGAGCCAGTTCT 689
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 767 AGAATTTGATCATCTCACCAAATGTTCTTTATATTCTATGGAAGTAGCTAAGCCAGTTCT 826
Query 690 CCCCAGAGTGAAAGAAAATAATCTCGGTATTTCTTCTATATCACAAACCAACCAGCCAAC 749
||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 827 CCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCAACCAGCCAAC 886
Query 750 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAGGTAAACATTGACACTCA 809
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 887 CGCAGAAATTTTGCAGATTTACTTGACAACTTGGCTTGCAGAAGTAAACATCGACACTCA 946
Query 810 TAGGGTGGATGAGATATTAGCTTTGGTCGGGGAAGAAACTAGAGTCACCTTCTA 863
||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 947 TAGGGTGGATGAGATATTAGCTTTGGTTGGGGAAGAAATTAGAGTCACCTTCTA 1000
Score = 54.7 bits (29), Expect = 1e-06
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGTCTCGCAGTTTCCGCCGCCTGCTTCTCC 35
||||| ||||||||||||||||||||||||||||
Sbjct 90 ATGAGCATCTCGCAGTTTCCGCCGCCTGCTTCTCC 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5