BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325405
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |... 2942 0.0
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A ... 1504 0.0
> AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B
| chr5:2572107-2574879 FORWARD LENGTH=1815
Length=1815
Score = 2942 bits (1593), Expect = 0.0
Identities = 1743/1817 (96%), Gaps = 4/1817 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTTTTATCGAATCAATCCCTTGAT 60
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTATTAGCCAATCAATCCCTTGAT 60
Query 61 TCTTCCTCTGTTCGACCCGATATCGTTGTTCAAGTCGTGGATCTTAAGCCTGTC-GGAAA 119
|| ||||||||| ||||||| || |||||||||||||||||||||||||||| | |||||
Sbjct 61 TCCTCCTCTGTTAGACCCGAAATTGTTGTTCAAGTCGTGGATCTTAAGCCTG-CTGGAAA 119
Query 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATGAAAGCAATGCTACCAGCGAC 179
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATTAAAGCAATGTTACCAGCGAC 179
Query 180 TTTGACATCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTGATTCGTCTCCTTGA 239
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TTTGACTTCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTTATTCGTCTCCTTGA 239
Query 240 TTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299
Query 300 TGAGGCCGTTGCCTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAGGCTGTTGCTTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359
Query 360 CATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGATAATCAATGA 419
||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 360 CATAATGTTGAAACCCAAGCATGAGTTTGTTGCCAAATCAGCTTCACAGATTATCAATGA 419
Query 420 GCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAAGGGGAAATGCTGCACCTGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479
Query 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACAAACAAAGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACTAACAAAGG 539
Query 540 AGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTCATGAGAACTTACAAAAATGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599
Query 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659
Query 660 TGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTAAGCTTGCTAA 719
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TGACAGATTCGAGATGGGAAAGGTGTACTATATATCCAGGGGATCACTTAAGCTTGCTAA 719
Query 720 TAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGAATTCTGAGGT 779
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 720 TAAGCAGTTCAAGACGGTTCAGAACGATTATGAGATGACCCTAAATGAGAATTCTGAGGT 779
Query 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACTCCTGAAATTAAATTCAACTTTGTACCCAT 839
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACCCCTGAAACTAAATTCAACTTTGTACCCAT 839
Query 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899
Query 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAATGACAATGAAATGATCCCAAAGAG 959
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAG 959
Query 960 GGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCCTTTGGAATGATTT 1019
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 960 AGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCT 1019
Query 1020 GGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAATCACCCTGTTATCGCGAT 1079
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCACCCTGTTATCGCGAT 1079
Query 1080 TAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAACTATCAGCAGAAGCAA 1139
||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TAAATCTCTTAAAGTTGGAGCTTTTCAAGGTGTTTCATTGTCTACTATCAGCAGAAGCAA 1139
Query 1140 TGTGGTGATAAATCCTGATTCTCCAGAAGCTA-AGAAGTTGAAATCTTGGTATGATGCTG 1198
|||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1140 TGTGGTGATAAACCCTAATTCTCCAGAAGCTACA-AAGTTGAAATCTTGGTATGATGCTG 1198
Query 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTCTTCTGCCAACAATG 1258
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACG 1258
Query 1259 GATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTT 1318
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1259 GATCAAGATCCATGTATTCTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTT 1318
Query 1319 TAGGCGAGGAAAAGCCTGTATTCTTTAGTATTAGAGCTTACATAAGCTTCATCAAGCCAG 1378
|||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1319 TAGGCGAGGAGAAGCCTGTATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAG 1378
Query 1379 ACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAGGCAATGG 1438
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1379 ACCAAACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGG 1438
Query 1439 ACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAATGCAGTTTAAGGTATA 1498
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 ACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATA 1498
Query 1499 TAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATG 1558
||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1499 TAATGGCGGTGAAAGTCTCCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATG 1558
Query 1559 AAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAG 1618
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1559 AAGCAGAGAAGATTATCGGCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAG 1618
Query 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGGTCATCTCATCTCTTCA 1678
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCC 1678
Query 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738
Query 1739 GTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1739 GTGTTTCTCCAATTGACTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798
Query 1799 AAAAGACATCTCAGTAA 1815
| |||||||||||||||
Sbjct 1799 ACAAGACATCTCAGTAA 1815
> AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
protein 1-related | chr5:24549578-24552723 REVERSE LENGTH=2076
Length=2076
Score = 1504 bits (814), Expect = 0.0
Identities = 1259/1476 (85%), Gaps = 21/1476 (1%)
Strand=Plus/Plus
Query 351 TTCCACAGGCATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGAT 410
||| || || || || |||||||| ||||| || ||||| |||||||||||||| |||||
Sbjct 505 TTCTACTGGTATCACATTGAAACCGAAGCAGGAATTTGTAGCCAAATCAGCTTCTCAGAT 564
Query 411 AATCAATGAGCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGT 470
||| | ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 565 AATGAGTGAACAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCCATGACTAGAAGGGT 624
Query 471 TCATCCTCTTGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCAC 530
|||||| |||||||| || || || |||||||||| ||||| || ||||| || || ||
Sbjct 625 TCATCCACTTGTGTCATTAAATCCATATCAAGGAAACTGGACCATCAAAGTCCGAGTTAC 684
Query 531 AAACAAAGGAGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGT 590
|||||| ||||| ||||||| |||||||||||| || || ||||||||||| || |||||
Sbjct 685 AAACAAGGGAGTGATGAGAAATTACAAAAACGCTAGGGGTGAAGGATGTGTCTTCAATGT 744
Query 591 GGAACTAACTGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCA-GCTGCAA 649
|||||||| ||||| ||||||||||| ||||| ||||| |||||||| | | |||||||
Sbjct 745 TGAACTAACAGATGAAGAAGGAACACAAATTCAAGCAACGATGTTTAATG-ATGCTGCAA 803
Query 650 GGAAGTTTTATGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTA 709
||||||||| |||||||||| || ||||||||||||| |||||||| ||||| || || |
Sbjct 804 GGAAGTTTTTTGACAGATTCCAGTTGGGAAAGGTTTATTATATATCAAGGGGGTCACTAA 863
Query 710 AGCTTGCTAATAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGA 769
| || ||||| ||||||||||| ||||||||||| |||||||||||||| || || || |
Sbjct 864 AACTCGCTAACAAGCAGTTCAAAACAGTTCAGAATGATTATGAGATGACACTGAATGAAA 923
Query 770 ATTCTGAGGTTGAAGAAGCTAGTAATGAAGAAATGTTTACTCC-TGAAATTAAATTCAAC 828
|||| |||||||| |||||||||| ||||||||||| | ||| ||| | |||||||||
Sbjct 924 ATTCAGAGGTTGAGGAAGCTAGTAGCGAAGAAATGTTCA-TCCCTGAGACAAAATTCAAC 982
Query 829 TTTGTACCCATTGATGAGTTGGGTACA-TACGTGAATCAGAAAGACCTTATTGATGTTAT 887
|| ||||||||||| ||||||||| | || || |||||||| || ||||||||| ||||
Sbjct 983 TTCGTACCCATTGAAGAGTTGGGT-CTGTATGTTAATCAGAAGGAACTTATTGATCTTAT 1041
Query 888 CGGTGTTGTTCAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAA-TGACAATGAAA 946
|| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |
Sbjct 1042 TGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTATTAGAAGGAG-AACTGACAATGAGA 1100
Query 947 TGATCCCAAAGAGGGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCC 1006
|||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1101 TGATTCCTAAGAGGGATATAACTTTGGCTGATGAGTCAAGGAAAACTGTTGTGGTGTCCC 1160
Query 1007 TTTGGAATGAT-TTGGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAA-TCA 1064
| ||||||||| ||| ||||||||||||| || || || ||||||||||||||| | |||
Sbjct 1161 TGTGGAATGATCTTG-CAACTGGCATAGGTCAGGAGCTACTAGACATGGCTGATCAGTCA 1219
Query 1065 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAAC 1124
|| ||| || || || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1220 CC-TGTGATTGCAATCAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCGTTGTCTAC 1278
Query 1125 TATCAGCAGAAGCAATGTGGTGATAAATCCTGATTCTCCAGAAGCTAAGAAGTTGAAATC 1184
|||||||||||||||||||| || || || || || ||||||||||| |||||||||||
Sbjct 1279 CATCAGCAGAAGCAATGTGGTTATTAACCCGGAATCACCAGAAGCTAAAAAGTTGAAATC 1338
Query 1185 TTGGTATGATGCTGAAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTC 1244
||||| |||| ||||||| || || | ||| |||||| |||||||||| || ||||| |
Sbjct 1339 TTGGTTTGATTCTGAAGGCAAGGAAATATCCATGTCTTCTATTGGCTCAGGGATGAGCCC 1398
Query 1245 TTCTGCCAACAATGGATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCAC 1304
||||||||| |||||||| | || ||||| |||| |||| ||||||||||||||||
Sbjct 1399 TTCTGCCAAAAATGGATCTCGGTCTTTGTATACTGACCGAGTGCTTCTCTCTCACATCAC 1458
Query 1305 AAGCAACCCCTCTTTAGGCGAGGAAAAGCCTGTATTCTTT-AGTATTAGAGCTTACATAA 1363
|||||| || |||||| ||| |||||||||||||| ||| || | ||| ||||||||||
Sbjct 1459 AAGCAATCCATCTTTATTCGAAGAAAAGCCTGTATT-TTTCAGCACTAGGGCTTACATAA 1517
Query 1364 GCTTCATCAAGCCAGACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAG 1423
|||||||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1518 GCTTCATCAAACCAGACCAAACAATGTGGTACCAAGCTTGTAAGACTTGTAACAAGAAAG 1577
Query 1424 TGACTGAGGCAATGGACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAAT 1483
|||| || ||| | ||||||||||| ||||||||||| || |||| |||| || ||||||
Sbjct 1578 TGACAGAAGCACTTGACTCTGGTTACTGGTGTGAAGGATGCCAGAGAAAGTATGAAGAAT 1637
Query 1484 GCAGTTTAAGGTATATAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTT 1543
|||| |||||||| |||||||||||||||||| | || ||| | || ||||||||| |||
Sbjct 1638 GCAGCTTAAGGTACATAATGGCGGTGAAAGTCACCGACTCATCTGGAGAAACTTGGATTT 1697
Query 1544 C-TGCATTCAATGATGAAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAAT 1602
| | ||||||| |||||||||||||||||| |||| || |||||||||| ||||| ||
Sbjct 1698 CGT-CATTCAACGATGAAGCAGAGAAGATTCTTGGATGTTCAGCTGATGAGCTCAACAAA 1756
Query 1603 CTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGG 1662
||||||||||||||||||||||| ||||| | |||||||||||||||||| | || |||
Sbjct 1757 CTAAAATCAGAGGAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGG 1816
Query 1663 TCATCTCATCTCTTCAGGATTAGTGTTTCTCAGCAA-GAGTATAACAGTGAGAAGAGACA 1721
||||||||| ||||| || ||||||| | ||| || ||||||||| |||||||||||||
Sbjct 1817 TCATCTCATGTCTTCCGGGTTAGTGTCACACAG-AATGAGTATAACGGTGAGAAGAGACA 1875
Query 1722 GAGGATAACTGTAAGAGGTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCT 1781
|||| ||||||||| ||| || |||| |||| ||||| |||||||||||||| |||||
Sbjct 1876 GAGGGTAACTGTAAAAGGAGTAGCTCCTCTTGATTTTGCTGCTGAAACAAGATTGTTGCT 1935
Query 1782 CCAAGACATTTCCAAGAA-AA-AGA-CATCTCAGTA 1814
|||||||| ||||| || || | | ||||||||||
Sbjct 1936 TCAAGACATCTCCAACAAGAACAAAACATCTCAGTA 1971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5