BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325405 Length=1815 Score E Sequences producing significant alignments: (Bits) Value AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |... 2942 0.0 AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A ... 1504 0.0 > AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=1815 Length=1815 Score = 2942 bits (1593), Expect = 0.0 Identities = 1743/1817 (96%), Gaps = 4/1817 (0%) Strand=Plus/Plus Query 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTTTTATCGAATCAATCCCTTGAT 60 |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 1 ATGGAGAACTCAGTGACCCAAGATGGTATCGCGACAGTATTAGCCAATCAATCCCTTGAT 60 Query 61 TCTTCCTCTGTTCGACCCGATATCGTTGTTCAAGTCGTGGATCTTAAGCCTGTC-GGAAA 119 || ||||||||| ||||||| || |||||||||||||||||||||||||||| | ||||| Sbjct 61 TCCTCCTCTGTTAGACCCGAAATTGTTGTTCAAGTCGTGGATCTTAAGCCTG-CTGGAAA 119 Query 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATGAAAGCAATGCTACCAGCGAC 179 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 120 TCGATATACGTTTAGTGCCAATGATGGAAAGATGAAGATTAAAGCAATGTTACCAGCGAC 179 Query 180 TTTGACATCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTGATTCGTCTCCTTGA 239 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 TTTGACTTCTGATATCATCTCTGGAAAGATTCAGAATCTGGGTCTTATTCGTCTCCTTGA 239 Query 240 TTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GTATACCGTCAATGATATTCCAGGCAAATCAGAAGAAAAATATATGCTTATAACAAAATG 299 Query 300 TGAGGCCGTTGCCTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGAGGCTGTTGCTTCTGCACTTGACTCAGAGATTAAGGCGGAGATTAAAGCTTCCACAGG 359 Query 360 CATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGATAATCAATGA 419 ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 360 CATAATGTTGAAACCCAAGCATGAGTTTGTTGCCAAATCAGCTTCACAGATTATCAATGA 419 Query 420 GCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 GCAAAGGGGAAATGCTGCACCTGCTGCAAGAATGGCTATGACCAGAAGGGTTCATCCTCT 479 Query 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACAAACAAAGG 539 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 480 TGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCACTAACAAAGG 539 Query 540 AGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 540 AGTCATGAGAACTTACAAAAATGCCAGAGGAGAAGGATGTGTGTTTAATGTGGAACTAAC 599 Query 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCAGCTGCAAGGAAGTTTTA 659 Query 660 TGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTAAGCTTGCTAA 719 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 660 TGACAGATTCGAGATGGGAAAGGTGTACTATATATCCAGGGGATCACTTAAGCTTGCTAA 719 Query 720 TAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGAATTCTGAGGT 779 ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 720 TAAGCAGTTCAAGACGGTTCAGAACGATTATGAGATGACCCTAAATGAGAATTCTGAGGT 779 Query 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACTCCTGAAATTAAATTCAACTTTGTACCCAT 839 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 780 TGAAGAAGCTAGTAATGAAGAAATGTTTACCCCTGAAACTAAATTCAACTTTGTACCCAT 839 Query 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGATGAGTTGGGTACATACGTGAATCAGAAAGACCTTATTGATGTTATCGGTGTTGTTCA 899 Query 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAATGACAATGAAATGATCCCAAAGAG 959 |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct 900 AAGTGTTTCTCCTACCATGAGCATTAGAAGGAAGAACGACAATGAGATGATCCCAAAGAG 959 Query 960 GGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCCTTTGGAATGATTT 1019 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | Sbjct 960 AGATATAACTTTGGCTGATGAGACAAAGAAAACTGTTGTGGTGTCCCTTTGGAATGATCT 1019 Query 1020 GGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAATCACCCTGTTATCGCGAT 1079 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1020 AGCAACTGGCATTGGCCAAGAACTGCTGGACATGGCTGATAATCACCCTGTTATCGCGAT 1079 Query 1080 TAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAACTATCAGCAGAAGCAA 1139 ||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1080 TAAATCTCTTAAAGTTGGAGCTTTTCAAGGTGTTTCATTGTCTACTATCAGCAGAAGCAA 1139 Query 1140 TGTGGTGATAAATCCTGATTCTCCAGAAGCTA-AGAAGTTGAAATCTTGGTATGATGCTG 1198 |||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1140 TGTGGTGATAAACCCTAATTCTCCAGAAGCTACA-AAGTTGAAATCTTGGTATGATGCTG 1198 Query 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTCTTCTGCCAACAATG 1258 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 1199 AAGGGAAAGAGACATCTATGTCTGCTATTGGTTCTGGGATGAGTTCTTCTGCCAACAACG 1258 Query 1259 GATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCACAAGCAACCCCTCTT 1318 |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 1259 GATCAAGATCCATGTATTCTGACAGAGTTTTTCTTTCTCACATCACAAGCAATCCCTCTT 1318 Query 1319 TAGGCGAGGAAAAGCCTGTATTCTTTAGTATTAGAGCTTACATAAGCTTCATCAAGCCAG 1378 |||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 1319 TAGGCGAGGAGAAGCCTGTATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAG 1378 Query 1379 ACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTGACTGAGGCAATGG 1438 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1379 ACCAAACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAGCAATGG 1438 Query 1439 ACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAATGCAGTTTAAGGTATA 1498 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1439 ACTCTGGTTATTGGTGTGAAAGTTGTCAGAAAAAGGACCAAGAATGCAGTTTAAGGTATA 1498 Query 1499 TAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTTCTGCATTCAATGATG 1558 ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| Sbjct 1499 TAATGGCGGTGAAAGTCTCCGACTCAACTGGTGAAACTTGGTTATCTGCATTCAATGATG 1558 Query 1559 AAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAATCTAAAATCAGAGGAAG 1618 |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1559 AAGCAGAGAAGATTATCGGCTGCACAGCTGATGATCTCAATGATCTAAAATCAGAGGAAG 1618 Query 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGGTCATCTCATCTCTTCA 1678 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1619 GTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAGCTACTTGGTCATCTCATCTCTTCC 1678 Query 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 GGATTAGTGTTTCTCAGCAAGAGTATAACAGTGAGAAGAGACAGAGGATAACTGTAAGAG 1738 Query 1739 GTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1739 GTGTTTCTCCAATTGACTTTGCTGCTGAAACAAGATTATTGCTCCAAGACATTTCCAAGA 1798 Query 1799 AAAAGACATCTCAGTAA 1815 | ||||||||||||||| Sbjct 1799 ACAAGACATCTCAGTAA 1815 > AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A protein 1-related | chr5:24549578-24552723 REVERSE LENGTH=2076 Length=2076 Score = 1504 bits (814), Expect = 0.0 Identities = 1259/1476 (85%), Gaps = 21/1476 (1%) Strand=Plus/Plus Query 351 TTCCACAGGCATAACGTTGAAACCAAAGCAAGAGTTTGTTGCCAAATCAGCTTCACAGAT 410 ||| || || || || |||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 505 TTCTACTGGTATCACATTGAAACCGAAGCAGGAATTTGTAGCCAAATCAGCTTCTCAGAT 564 Query 411 AATCAATGAGCAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCTATGACCAGAAGGGT 470 ||| | ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 565 AATGAGTGAACAAAGGGGAAATGCTGCACCAGCTGCAAGAATGGCCATGACTAGAAGGGT 624 Query 471 TCATCCTCTTGTGTCCTTGAACCCTTATCAAGGAAGTTGGACTATTAAAGTTCGTGTCAC 530 |||||| |||||||| || || || |||||||||| ||||| || ||||| || || || Sbjct 625 TCATCCACTTGTGTCATTAAATCCATATCAAGGAAACTGGACCATCAAAGTCCGAGTTAC 684 Query 531 AAACAAAGGAGTCATGAGAACTTACAAAAACGCCAGAGGAGAAGGATGTGTGTTTAATGT 590 |||||| ||||| ||||||| |||||||||||| || || ||||||||||| || ||||| Sbjct 685 AAACAAGGGAGTGATGAGAAATTACAAAAACGCTAGGGGTGAAGGATGTGTCTTCAATGT 744 Query 591 GGAACTAACTGATGAGGAAGGAACACAGATTCAGGCAACAATGTTTAACGCA-GCTGCAA 649 |||||||| ||||| ||||||||||| ||||| ||||| |||||||| | | ||||||| Sbjct 745 TGAACTAACAGATGAAGAAGGAACACAAATTCAAGCAACGATGTTTAATG-ATGCTGCAA 803 Query 650 GGAAGTTTTATGACAGATTCGAGATGGGAAAGGTTTACTATATATCCAGGGGATCGCTTA 709 ||||||||| |||||||||| || ||||||||||||| |||||||| ||||| || || | Sbjct 804 GGAAGTTTTTTGACAGATTCCAGTTGGGAAAGGTTTATTATATATCAAGGGGGTCACTAA 863 Query 710 AGCTTGCTAATAAGCAGTTCAAGACAGTTCAGAACGATTATGAGATGACTCTAAACGAGA 769 | || ||||| ||||||||||| ||||||||||| |||||||||||||| || || || | Sbjct 864 AACTCGCTAACAAGCAGTTCAAAACAGTTCAGAATGATTATGAGATGACACTGAATGAAA 923 Query 770 ATTCTGAGGTTGAAGAAGCTAGTAATGAAGAAATGTTTACTCC-TGAAATTAAATTCAAC 828 |||| |||||||| |||||||||| ||||||||||| | ||| ||| | ||||||||| Sbjct 924 ATTCAGAGGTTGAGGAAGCTAGTAGCGAAGAAATGTTCA-TCCCTGAGACAAAATTCAAC 982 Query 829 TTTGTACCCATTGATGAGTTGGGTACA-TACGTGAATCAGAAAGACCTTATTGATGTTAT 887 || ||||||||||| ||||||||| | || || |||||||| || ||||||||| |||| Sbjct 983 TTCGTACCCATTGAAGAGTTGGGT-CTGTATGTTAATCAGAAGGAACTTATTGATCTTAT 1041 Query 888 CGGTGTTGTTCAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAGGAA-TGACAATGAAA 946 || |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| | Sbjct 1042 TGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTATTAGAAGGAG-AACTGACAATGAGA 1100 Query 947 TGATCCCAAAGAGGGATATAACTTTGGCTGATGAGTCAAAGAATACTGTTGTGGTGTCCC 1006 |||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1101 TGATTCCTAAGAGGGATATAACTTTGGCTGATGAGTCAAGGAAAACTGTTGTGGTGTCCC 1160 Query 1007 TTTGGAATGAT-TTGGCAACTGGCATAGGCCAAGAACTGCTAGACATGGCTGATAA-TCA 1064 | ||||||||| ||| ||||||||||||| || || || ||||||||||||||| | ||| Sbjct 1161 TGTGGAATGATCTTG-CAACTGGCATAGGTCAGGAGCTACTAGACATGGCTGATCAGTCA 1219 Query 1065 CCCTGTTATCGCGATTAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCATTGTCAAC 1124 || ||| || || || ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1220 CC-TGTGATTGCAATCAAGTCTCTCAAAGTTGGAGATTTTCAAGGTGTTTCGTTGTCTAC 1278 Query 1125 TATCAGCAGAAGCAATGTGGTGATAAATCCTGATTCTCCAGAAGCTAAGAAGTTGAAATC 1184 |||||||||||||||||||| || || || || || ||||||||||| ||||||||||| Sbjct 1279 CATCAGCAGAAGCAATGTGGTTATTAACCCGGAATCACCAGAAGCTAAAAAGTTGAAATC 1338 Query 1185 TTGGTATGATGCTGAAGGGAAAGAGACATCTATGTCTGCTATTGGCTCTGGAATGAGTTC 1244 ||||| |||| ||||||| || || | ||| |||||| |||||||||| || ||||| | Sbjct 1339 TTGGTTTGATTCTGAAGGCAAGGAAATATCCATGTCTTCTATTGGCTCAGGGATGAGCCC 1398 Query 1245 TTCTGCCAACAATGGATCAAGATCCATGTATTCTGATAGAGTTTTTCTCTCTCACATCAC 1304 ||||||||| |||||||| | || ||||| |||| |||| |||||||||||||||| Sbjct 1399 TTCTGCCAAAAATGGATCTCGGTCTTTGTATACTGACCGAGTGCTTCTCTCTCACATCAC 1458 Query 1305 AAGCAACCCCTCTTTAGGCGAGGAAAAGCCTGTATTCTTT-AGTATTAGAGCTTACATAA 1363 |||||| || |||||| ||| |||||||||||||| ||| || | ||| |||||||||| Sbjct 1459 AAGCAATCCATCTTTATTCGAAGAAAAGCCTGTATT-TTTCAGCACTAGGGCTTACATAA 1517 Query 1364 GCTTCATCAAGCCAGACCAGACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAG 1423 |||||||||| |||||||| ||||||||||||| ||||| ||||| ||||||||||||| Sbjct 1518 GCTTCATCAAACCAGACCAAACAATGTGGTACCAAGCTTGTAAGACTTGTAACAAGAAAG 1577 Query 1424 TGACTGAGGCAATGGACTCTGGTTATTGGTGTGAAGGTTGTCAGAAAAAGGATCAAGAAT 1483 |||| || ||| | ||||||||||| ||||||||||| || |||| |||| || |||||| Sbjct 1578 TGACAGAAGCACTTGACTCTGGTTACTGGTGTGAAGGATGCCAGAGAAAGTATGAAGAAT 1637 Query 1484 GCAGTTTAAGGTATATAATGGCGGTGAAAGTCTCTGATTCAACAGGTGAAACTTGGTTTT 1543 |||| |||||||| |||||||||||||||||| | || ||| | || ||||||||| ||| Sbjct 1638 GCAGCTTAAGGTACATAATGGCGGTGAAAGTCACCGACTCATCTGGAGAAACTTGGATTT 1697 Query 1544 C-TGCATTCAATGATGAAGCAGAGAAGATTATTGGCTGCACAGCTGATGAACTCAATAAT 1602 | | ||||||| |||||||||||||||||| |||| || |||||||||| ||||| || Sbjct 1698 CGT-CATTCAACGATGAAGCAGAGAAGATTCTTGGATGTTCAGCTGATGAGCTCAACAAA 1756 Query 1603 CTAAAATCAGAGGAAGGTGAAGTGAATGAGTTTCAGACAAAACTGAAAGAAACTACTTGG 1662 ||||||||||||||||||||||| ||||| | |||||||||||||||||| | || ||| Sbjct 1757 CTAAAATCAGAGGAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGG 1816 Query 1663 TCATCTCATCTCTTCAGGATTAGTGTTTCTCAGCAA-GAGTATAACAGTGAGAAGAGACA 1721 ||||||||| ||||| || ||||||| | ||| || ||||||||| ||||||||||||| Sbjct 1817 TCATCTCATGTCTTCCGGGTTAGTGTCACACAG-AATGAGTATAACGGTGAGAAGAGACA 1875 Query 1722 GAGGATAACTGTAAGAGGTGTTTCTCCAATTGACTTTGCAGCTGAAACAAGATTATTGCT 1781 |||| ||||||||| ||| || |||| |||| ||||| |||||||||||||| ||||| Sbjct 1876 GAGGGTAACTGTAAAAGGAGTAGCTCCTCTTGATTTTGCTGCTGAAACAAGATTGTTGCT 1935 Query 1782 CCAAGACATTTCCAAGAA-AA-AGA-CATCTCAGTA 1814 |||||||| ||||| || || | | |||||||||| Sbjct 1936 TCAAGACATCTCCAACAAGAACAAAACATCTCAGTA 1971 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89808775005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5