BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325438
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08410.1 | Symbols: FTRA2 | ferredoxin/thioredoxin reductase... 889 0.0
AT5G08415.1 | Symbols: | Radical SAM superfamily protein | chr... 798 0.0
> AT5G08410.1 | Symbols: FTRA2 | ferredoxin/thioredoxin reductase
subunit A (variable subunit) 2 | chr5:2709848-2710583 REVERSE
LENGTH=736
Length=736
Score = 889 bits (481), Expect = 0.0
Identities = 532/557 (96%), Gaps = 2/557 (0%)
Strand=Plus/Plus
Query 879 GATGACTAACGGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 938
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GATGACTAACAGTTACGCTCTGTCACCGGCGATTATCGCCGCCGTTCGTCCTCCGGCATC 114
Query 939 TCAAGACTGTCTAGCTT-CTGCTTCTCTTAATGGACGTAAATCGATCACCTCTTCATCTT 997
|||||||| ||||| || |||||||||||| |||||| |||||||||| |||||||||||
Sbjct 115 TCAAGACTATCTAG-TTGCTGCTTCTCTTAGTGGACGCAAATCGATCAACTCTTCATCTT 173
Query 998 CTTCCATCTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGGCTTCT 1057
| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 CGTCCATTTTCGTACCTATCTCATTATCTACTTCCTACGGTCGAAGCAAATGCGCCTTCT 233
Query 1058 CAATCTCGCGAAAGAATCCAAGATCGACAATTCGTTGTGATATTGCTGTGAAATCGGCAG 1117
|||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| |
Sbjct 234 CAATCTCGCGGAAGAATCCAAAATCGACGATTCGTTGCGATATTGCTGTGAAATCGGCGG 293
Query 1118 CTTCTGTCGACGCGGACGCTGATCTTTCTTCATCTACGTCATTGGAGACTGAGGAAGACG 1177
||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 294 CTTCTGTAGACGCGGACGCTGATCTATCGTCATCTACGTCGTTGGAGACGGAGGAAGACG 353
Query 1178 AGAAGGCGAAGGAGAAGATTGGGGCTAGGGTTAGGGTTACGGTGCCGTTGAAAGTTTACC 1237
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 354 AGAAAGCGAAGGAGAAGATTGGAGCTAGGGTTAGGGTTACGGTTCCGTTGAAAGTTTACC 413
Query 1238 ATGTGGTTCGTGTACCGGAGGTTGAGTTGATGGGAATGGAAGGTTTTATCAAAGATTACG 1297
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 414 ATGTGGTTCGTGTACCGGAGGTTGAATTGATGGGAATGGAAGGTTTTATCAAAGATTACG 473
Query 1298 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAATTCGTGA 1357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 474 TCGTTCTTTGGAAAGGAAAGAAAATCTCAGCTAATCTGCCGTTTAAGGTACAGTTCGTGA 533
Query 1358 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AAGAGATCGAAGGTCGTGGTCCTGTCAAATTCTTCACGCATCTTAAGGAAGACGAGTTCG 593
Query 1418 AGTTAATTGATCCGTGA 1434
|||||||||||||||||
Sbjct 594 AGTTAATTGATCCGTGA 610
> AT5G08415.1 | Symbols: | Radical SAM superfamily protein | chr5:2710817-2713132
REVERSE LENGTH=1382
Length=1382
Score = 798 bits (432), Expect = 0.0
Identities = 476/498 (96%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGTCGTCGTCTTTGAAGAAAAATCTGATGGAGTTAGAAGGGAAGAAGAGTGAG 60
|||||||| |||||||| |||||||| | | |||||||||||||||||||||||||||||
Sbjct 200 ATGGAGGATTCGTCGTCCTTGAAGAAGAGTTTGATGGAGTTAGAAGGGAAGAAGAGTGAG 259
Query 61 CCTTACCCAGGAGGAATGCCGAAGATGGGTCCATTCACTGGGAGAGATCCGAATGTGAAG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 260 CCTTACCCAGGAGGAATGCCGAAGATGGGTCCATTCACAGGGAGAGATCCGAATGTGAAG 319
Query 121 AAACCTTCTTGGTTGAGACAAAAGGCACCTCAAGGCGAGAGGTTTCAGGAGGTGAAGGAG 180
|||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct 320 AAACCTGCTTGGTTGAGACAGAAGGCACCACAAGGCGAAAGGTTTCAGGAGGTGAAAGAG 379
Query 181 TCGCTATCTCGTCTCAATCTCAATACTGTTTGTGAAGAAGCTCAGTGTCCTAATATCGGC 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCCCTTTCTCGTCTCAATCTCAATACTGTTTGTGAAGAAGCTCAGTGTCCTAATATCGGC 439
Query 241 GAGTGTTGGAATGGAGGTGGTGACGGTATAGCTACTGCAACCATCATGGTTCTTGGTGAT 300
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 440 GAGTGTTGGAATGGAGGTGGTGATGGTGTAGCAACTGCAACCATCATGGTTCTTGGTGAT 499
Query 301 ACTTGTACTCGTGGCTGTAGATTCTGTGCCGTTAAAACCAGTAGAAATCCTCCTCCTCCT 360
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 500 ACTTGTACTCGTGGCTGTAGATTCTGTGCTGTTAAAACAAGTAGAAATCCTCCTCCTCCT 559
Query 361 GACCCAATGGAACCAGAGAACACTGCCAAGGCCATAGCTAGTTGGGGTGTAGACTACATT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 560 GACCCAATGGAACCAGAGAACACTGCCAAGGCCATAGCCAGTTGGGGTGTAGACTACATA 619
Query 421 GTTATCACCAGCGTAGACCGTGACGATATACCTGATGGGGGAAGTGGACATTTTGCGCAG 480
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 620 GTTATTACCAGCGTAGACCGTGACGATATACCTGATGGTGGAAGTGGACATTTTGCGCAG 679
Query 481 ACTGTCAAAGCTATGAAG 498
||||||||||||||||||
Sbjct 680 ACTGTCAAAGCTATGAAG 697
Score = 686 bits (371), Expect = 0.0
Identities = 379/383 (99%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 497 AGGCTGTCGACACTCTTGTGCACTCGGGATTGGATGTTTTTGCTCACAATGTCGAGACTG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 AGGCTGTCGACACTCTTGTGCACTCGGGATTGGATGTTTTTGCTCACAATGTCGAGACTG 815
Query 557 TGAAAAGGCTCCAGCGACTTGTGAGGGATCCTAGGGCTGGATATGAGCAGAGCATGTCGG 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 816 TGAAAAGGCTCCAGCGACTTGTGAGGGATCCTAGGGCTGGATATGAGCAGAGCATGTCAG 875
Query 617 TTTTGAAACATGCAAAGATCAGCAAACCTGGAATGATCACAAAGACATCCATAATGCTGG 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 876 TTTTGAAACATGCAAAGATCAGCAAACCTGGAATGATCACAAAGACATCCATAATGCTTG 935
Query 677 GTCTTGGAGAAACAGACGAAGAGTTGAAGGAAGCAATGGCTGATCTAAGAGCTATAGATG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GTCTTGGAGAAACAGACGAAGAGTTGAAGGAAGCAATGGCTGATCTAAGAGCTATAGATG 995
Query 737 TTGATATTCTAACACTTGGCCAGTATTTACAGCCAACTCCATTGCATCTGACTGTGAAAG 796
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 996 TTGATATTCTAACACTTGGCCAGTATCTACAGCCAACTCCATTGCATCTGACTGTGAAAG 1055
Query 797 AGTATGTCACACCTGAGAAGTTTGATTTCTGGAAAACATACGGAGAATCAATAGGATTTC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGTATGTCACACCTGAGAAGTTTGATTTCTGGAAAACATACGGAGAATCAATAGGATTTC 1115
Query 857 GCTATGTTGCAAGTGGTCCACTG 879
| |||||||||||||||||||||
Sbjct 1116 GTTATGTTGCAAGTGGTCCACTG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5