BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325441
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08440.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1941 0.0
> AT5G08440.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G23490.1). | chr5:2720669-2727167 FORWARD
LENGTH=2884
Length=2884
Score = 1941 bits (1051), Expect = 0.0
Identities = 1147/1191 (96%), Gaps = 16/1191 (1%)
Strand=Plus/Plus
Query 1001 AGGTTCTATTTAGGCATCTGCAGGAGAAGCTCAATGTTAC-------TG--A----GACA 1047
|||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1497 AGGTTCTATTTAGGCATCTGCAGGAGAAGCTCAATGTTACTGAGGTATGATATGCGGACA 1556
Query 1048 AAGCTAAAGGAGACAGAATACCAATTAGCACCTTGGCAGTCAGATGCAAACCACTCAATT 1107
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1557 AAGCTAAAGGAGACAGAGTACCAATTAGCACCTTGGCAGTCAGATGTAAACCACTCAAAT 1616
Query 1108 GCTTCACCTTTGTCACCATATCAGCCTGTTGGTGTGGGTTTGAGATATTCAACAGATCCA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 GCTTCACCTTTGTCACCATATCAGCCTGTTGGTGTGGGTTTGAGATATTCAACAGATTCA 1676
Query 1168 GAACACCATCATCAAGACAGGCATGGTGGCTCAGCTGCGAGTAATTACCATCTTGATGGT 1227
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1677 GAACACCATCATCAAGACAGGCGTGGTGGCTCAGCTGCGAGTAATTACCATCTTGATGGT 1736
Query 1228 CCTGAGAGTAGATCGCCAGCCTTCCAGATGCCTGTGCAACCAGCTCTCAATCAAGATGAA 1287
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CCTGAGAGTAGGTCGCCAGCCTTCCAGATGCCTGTGCAACCAGCTCTCAATCAAGATGAA 1796
Query 1288 TCTCATGGACCAAATAATCGTGTTCAGTTTCGTGAGCCTCTCAGCAATACTTTTATGGAC 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TCTCATGGACCAAATAATCGTGTTCAGTTTCGTGAGCCTCTCAGCAATACTTTTATGGAC 1856
Query 1348 GATGCCTATGCTGACGTACAAGCAGATACAAATACAACTTTGGAAAATTCGACTTATGTG 1407
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1857 GATGCATATGCTGACGTACAAGCAGATTCAAATACAACTTTGGAAAATTCGACTTATGTG 1916
Query 1408 GCTGTTGATGATCCAAGCCCCTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAACCA 1467
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1917 GCTGTCGATGATCCAAGCCCTTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAGCCA 1976
Query 1468 TCTTCATCATTTTCCGAGGCTGCGGATGATGATCCGTTGCCAGGTATAGCAGACTTACAG 1527
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 TCTTCATCATTTTCTGAGGCTGCGGATGATGATCCGTTGCCAGGTATAGCAGACTTACAG 2036
Query 1528 ATATCAGGAGAACCTTTTCCTGGACGAGAGCTTCAGGTTTCTGGTCACTCTATCAACGGA 1587
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2037 ATATCAGGAGAACCTTTTCCTGGGCGAGAGCTTCAGGTTTCTGGTCACTCTATCAACGGA 2096
Query 1588 ACGACAAAATGTAATTTTGAGTGGGTACGGCATCTGGAAGATGGATCAGTGAACTACATT 1647
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2097 ACGACAAAATGTAATTTTGAGTGGGTAAGACATCTGGAAGATGGATCAGTGAACTACATT 2156
Query 1648 GATGGAGCAAAAAGGCCAGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCT 1707
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 GATGGAGCAAAGAGGCCCGATTATCTTGTCACAGCCGATGATGTTGATTTATACCTTGCT 2216
Query 1708 ATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAGGGGGAGCTTGTGAGGGTCTTCGCC 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 ATTGAAGTTCACCCCTTGGATGACAAGAACCGCAAGGGGGAGCTTGTGAGGGTCTTCGCC 2276
Query 1768 AACGAAAATTGCAAGATCACGTGTCATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTT 1827
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 AATGAAAATTGCAAGATCACGTGTCATCCAGAGATGCAGAGTCATATAGAGAAGAGTCTT 2336
Query 1828 TATAACGGTCATGCTTTATTCAAAGTCTTATATTCGATTGGTTATATGGATATATGGGAA 1887
|||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 2337 TATAACGGTCATGCTTTATTCAAAGTCTCCTATTCAATTGGTTATTTGGATATATGGGAA 2396
Query 1888 GCAGCTACCTTGTCTATTAAGAAAGAAGGCTACAGCATCAAACCTACTAATGACCCTGTA 1947
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GCAGCTACATTGTCTATTAAGAAAGAAGGCTACAGCATCAAACCTACTAATGACCCTGTA 2456
Query 1948 ATTACAGAAAAGTTCTCCTCTTCTACTAATATTGTGATTCCCTTTGATCAGCCTGCGGAT 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 ATTACAGAAAAGTTCTCCTCTTCTACTAATATTGTGATTCCCTTTGATCAGCCTGCGGAT 2516
Query 2008 TTTGTGATTATTGGTAGCGATGGCGTGGAGCATCTCTGTCGAGT-G-GG-CAATGATGCA 2064
|||||||||||||||| |||||||| |||||||||||||||||| | || ||||||||||
Sbjct 2517 TTTGTGATTATTGGTACCGATGGCGAGGAGCATCTCTGTCGAGTAGTGGACAATGATGCA 2576
Query 2065 ACAGATCTTAGCTGCTCAAGAGACACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG 2124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2577 ACAGATCTTAGCTGCTCAAGAGATACAATTGTGCTCACCCTTAGATTATTTCTTAAGAAG 2636
Query 2125 GCTCTGCAGAGAAAAAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGA 2175
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2637 ACTCTGCAGAGAAAGAAGGGGAAGAAAAAAGGATTTTTGTTTAACAAATGA 2687
Score = 1626 bits (880), Expect = 0.0
Identities = 964/1005 (96%), Gaps = 3/1005 (0%)
Strand=Plus/Plus
Query 1 ATGGACAACGGCCATGAAGAAAGACTTGCCGAGAGGGTTTCAGGAGTGGAACTCGGAGAA 60
||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 369 ATGGACAACGGCCATGAGGAAAGACTTGCCGAGAGGTTTTCGGGAGTGGGACTCGGAGAA 428
Query 61 TCTTCAGGTTCCCATGAAAACGACGTTAAAAACGATAGCTTGTTTCAAGTTATCAAAGCT 120
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCATCTGGTTCCCATGAAAACGACGTTAAAAACGATAGCTTGTTTCAAGTTATCAAAGCT 488
Query 121 GTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCTTAAAGGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTTGAAGCAGCAGAAGCCACAATCAAGCAGCAGGTGGAAGAGAATAACCTCTTAAAGGCT 548
Query 181 GAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATAAATCAGGAGAATCCTTGCCCCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATAAATCAGGAGAATCCTTGCCCCAG 608
Query 241 ACATCTGATCTAGGAAACCACTCGAATACTACAACCGGTGGGTCTTCCCCGTTACACCAG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 609 ACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGTCTTCCCCGTTACACCAG 668
Query 301 TCGGCCGCTGGTATTAATCTAGTTGACCGGATGAAAGGAAAAATCACTGCTTCAGGTACT 360
|||||||||||||||| ||||||||| |||| |||||| ||||||| |||||||| | ||
Sbjct 669 TCGGCCGCTGGTATTAGTCTAGTTGATCGGAGGAAAGGCAAAATCAATGCTTCAGCTGCT 728
Query 361 GATTCGTCAGGTATGCTGGTTGTTCACAAGCATGTGTATCCAAATGGAGAGGAAGCTACT 420
|| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 729 CATCCGTCAGGTATGCTGGTTGTTCACCAGCATGTGCATCCAAATGGAGAGGAAGCTACT 788
Query 421 GTGAGTCTTCGTTCTGAAGACCA---TTCTGAGAGAATCATGACTAATGGCATTGTCAGA 477
|||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 789 GTGAGTAATCGTTCTGAAGACCACCATTCTGAGGGAATCATGACTAATGGCATTGTCAGA 848
Query 478 GGAACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGCCATCTACAATATCATTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GGAACTGTAGGTGGTGGGGGAACCTCTCAATTGTCTTCGTCGCCATCTACAATATCATTA 908
Query 538 TCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTCACACATCAACTCGTCTTCTCAT 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 909 TCTCCTATGAGACCGCTATTGGAAGGAGATCATGACTTACACATCAACTCGTCTTCTCAT 968
Query 598 GAGTTGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCATGGAAGCAGGAACTCGTT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 969 GAATTGATGCCAGTAGGTGAAGTAAATAATTCGGGGACTGCATGGAAGCAGGAACTCATT 1028
Query 658 CACAAGGTCCAAGAACAAGAACAAGAGATTTTGCGCTTACGAAAATATCTTGCTGATTAT 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CACAAGGTCCAAGAACAAGACCAAGAGATTTTGCGCTTACGAAAATATCTTGCTGATTAT 1088
Query 718 TCTACCAAGGAAGCCCAAATACGCAATGAAAAATATGTTTTGGAAAGGCGTATTGCGCAC 777
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1089 TCTACCAAGGAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCAC 1148
Query 778 ATGCGTTCGGCATTTGATCAACAACAACAAGACCTTGTTGATGCTGCAGCAAAAGCTCTT 837
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1149 ATGCGTTCGGCATTTGACCAACAACAACAAGACCTTGTTGATGCTGCATCAAAAGCTCTT 1208
Query 838 TCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTAACATATGCCTTGCAGGCTGCA 897
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1209 TCTTACAGACAAGAGATCATTGAGGAAAATATACGCCTAACATATGCCTTACAGGCTGCA 1268
Query 898 GAGCAAGAGAGGTCTATGTTTGTATCGAACTTGTTACCTCTTCTATCGGAATATTCACTG 957
||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 1269 GAGCAAGAGAGGTCTCTGTTTGTATCGATCTTGTTACCTCTTCTATCAGAATATTCGCTG 1328
Query 958 CAACCACAGATCTCGGATTCTCAATCTATTGTCAGCAATGTGAAG 1002
|| |||||||||||||||||||| |||||||| |||| |||||||
Sbjct 1329 CATCCACAGATCTCGGATTCTCAGTCTATTGTTAGCAGTGTGAAG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107880971205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5