BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325456
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08580.1 | Symbols: | Calcium-binding EF hand family protei... 1940 0.0
> AT5G08580.1 | Symbols: | Calcium-binding EF hand family protein
| chr5:2780512-2783066 REVERSE LENGTH=1567
Length=1567
Score = 1940 bits (1050), Expect = 0.0
Identities = 1134/1176 (96%), Gaps = 0/1176 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAAAGCTTCGGTGATCCTATACATCACGGTGGGGATCCTCGTGCTCTTCCTCATC 60
||| ||||||||||||||||||||||||| ||||| || ||||| |||||||||||| ||
Sbjct 106 ATGAGTAAAGCTTCGGTGATCCTATACATTACGGTAGGAATCCTGGTGCTCTTCCTCGTC 165
Query 61 TCTTATTCCCCGAAGAAGAAGGGTGACCACGATCACCACCACGGTGGTCACAACCAACAC 120
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 166 TCTTATTCACCGAAGAAGAAGGGTGACCACGATCACCACCATGGTGGTCACAATCAACAT 225
Query 121 CACCGCTTAAAACTCCGGTCTTCTTTCAATTTCAAACCTACTCGTCACGATCCAGTTCCG 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 226 CACCGCTTAAAACTCCGGTCTTCTTTCAATTTCAAACCCACTCGTCACGATCCAGTTCCG 285
Query 181 TTCGATCCTCTTGTCGCCGACATGGAGCGCCGTCGCGAGGATAAAGAGTGGGAGCGACAG 240
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 286 TTTGATCCTCTTGTCGCCGACATGGAGCGCCGCCGCGAGGATAAGGAGTGGGAGCGACAG 345
Query 241 TACATTGAGCATTCTCATCCAGAGCTTGTCTCTCATTCACAGAAAGAAACAACCGGTGGT 300
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 346 TACATTGAGCATTCTCACCCGGAGCTTGTCTCTCATTCTCAGAAAGAAACAACCGGTGGT 405
Query 301 GGACATGAACATGCACCTGGTCACGAGTCGCAACCTGAGTGGGAAGATTTCATGGATGCT 360
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 406 GGACATGAACATGCACCTGGTCACGAGTCGCAGCCTGAGTGGGAAGAATTCATGGATGCT 465
Query 361 GAGGATTACTTGAATGATGAGGAGAAGTTCAATGTCACTGATAGGCTGATGTTGTTATTT 420
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 466 GAGGATTACTTAAATGATGAGGAGAAGTTCAATGTCACTGATAGGCTGATATTGTTGTTT 525
Query 421 CCGAAGATCGATGTTTCTCCTACTGATGGGTTTGTGACGGAGAGTGAATTGACTGAGTGG 480
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 526 CCGAAGATTGATGTTTCTCCTGCTGATGGGTTTATGACGGAGAGTGAATTGACTGAGTGG 585
Query 481 ACTATGCAGTCTTCTGCCAAGGAAGTTGTGCACAGAACTCAAAGAGACCTGGATGTTCAT 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 586 ACTATGCAGTCTTCTGCCAAGGAAGTTGTGCACAGAACTCAACGAGACCTGGATGTTCAT 645
Query 541 GATAGAAACAAGGATGGTTTTATTTCTTTCTCTGAATATGAACCACCGTCTTGGGTCCGT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GATAGAAACAAAGATGGTTTTATTTCTTTCTCTGAATATGAACCACCGTCTTGGGTCCGT 705
Query 601 AAGTCGGATAATAATTCCTTTGGCTATGACATGGGCTGGTGGAAGGAAGAGCATTTTAAT 660
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 706 AAGTCGGATAATAATTCGTTTGGCTATGATATGGGCTGGTGGAAGGAGGAGCATTTTAAT 765
Query 661 GCATCAGATGCAAATGGTGATGGTCTTCTGAATTTAACAGAGTTTAACGACTTTCTGCAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCATCAGATGCAAATGGTGATGGTCTTCTGAATTTAACAGAGTTTAACGACTTTCTGCAT 825
Query 721 CCTGCTGACACCAAGAACCCAAAGTTACTGTTATGGTTATGCAAGGAGGAAGTAAGAGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CCTGCTGACACCAAGAACCCAAAGTTACTGTTATGGTTATGCAAGGAGGAAGTAAGAGAA 885
Query 781 AGGGATTCAGATAAAGATGGTAAGATCAGTTTCGAAGAGTTTTTCCACGGCCTCTTTGAC 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGGGATTCAGATAAAGATGGGAAGATCAGTTTCGAAGAGTTTTTCCACGGCCTCTTTGAC 945
Query 841 ACTGTAAGGAACTACGAAGAAGACAATCACAATTCTACGCATCCTTATCATGACTTACCT 900
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 946 ACTGTAAGGAACTACGAAGAAGACAATCACAATTCTACGCATCCTTACCATGACTTGCCT 1005
Query 901 GAAGGCCCTGCAAAGCAGTTGTTTGCTCAGCTTGACAAAAATGATGACGGGTACTTATCA 960
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1006 GAAGGCCCAGCAAAGCAGTTGTTTTCTCAGCTTGACAAAAATGATGACGGGTACTTATCA 1065
Query 961 GACGTTGAATTGCTTCCCATTATCAGTAAAATCCATCCTACTGAGCATTATTATGCAAAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GACGTTGAATTGCTTCCCATTATCAGTAAAATCCATCCTACTGAGCATTATTATGCAAAG 1125
Query 1021 CAACAAGCTGATTATATTATATCACAGGCGGATTCAGACAAAGATAGACGTCTGACTTTG 1080
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1126 CAACAAGCTGATTATATAATATCACAGGCGGATTCAGACAAAGATAGACGTTTGACTTTG 1185
Query 1081 GCAGAGATGATTGAGCATCCATACGTCTTCTACAGTGCCATTTTCGATGAAGATGACACT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCAGAGATGATTGAGCATCCATACGTCTTCTACAGTGCCATTTTCGATGAAGATGACACT 1245
Query 1141 GATGATGACTATGGCTACCACGATGAGTTCCGCTAG 1176
|||||||| ||||| | ||||||||| |||||||||
Sbjct 1246 GATGATGATTATGGTTTCCACGATGAATTCCGCTAG 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5