BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325471

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   327    2e-89


> AT5G08760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 3 Blast hits to 3 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:2854940-2855617 FORWARD LENGTH=388
Length=388

 Score =  327 bits (177),  Expect = 2e-89
 Identities = 226/248 (91%), Gaps = 10/248 (4%)
 Strand=Plus/Plus

Query  1    ATGTCTAAAGAGAAATCATATATAATTGCTCTTCTTCTATCTTTGCTTCTATGTCTTTCT  60
            ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  8    ATGTCTAAAGAGAAATCATATGTAATTGCTCTTCTTCTATCTTTGCTTCTCTGTCTTTCT  67

Query  61   TCTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGTTACTACAAGGTACTCGGATTCT  120
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68   TTTCAAGTTGGTGTCTCTGAGGCCAACTACAACGCAGTTACTACAAGGTACTCGGATTCT  127

Query  121  C---GATGCGCCAATGAATCTTCTGCAAGTCCACCACCACCAAGACACTACCCACGGGGG  177
            |   |||||||||||| |||||||||||||||||||  || ||||||||  ||| |||||
Sbjct  128  CCTCGATGCGCCAATGGATCTTCTGCAAGTCCACCA--AC-AAGACACTGTCCAAGGGGG  184

Query  178  CGTCCCCGTCCTG-TAC-CGGTTAGATCTGCGGTGCACTCTAACTCAACCAAAGGAAAAG  235
            ||||||||||||  ||| | |  || |  |||||||||||||||||||||||||||||||
Sbjct  185  CGTCCCCGTCCTCCTACACCGAGAG-TA-GCGGTGCACTCTAACTCAACCAAAGGAAAAG  242

Query  236  GCCCATAA  243
            ||||||||
Sbjct  243  GCCCATAA  250



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5