BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325480
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc... 1088 0.0
AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255... 516 1e-145
> AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated
protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040
Length=1040
Score = 1088 bits (589), Expect = 0.0
Identities = 633/654 (97%), Gaps = 3/654 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAATTTGTTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTTTCT 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104
Query 61 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164
Query 121 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 224
Query 181 GCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 240
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 GCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 284
Query 241 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAGCAGTCTTTGAG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 285 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTGAG 344
Query 301 AGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGATGAT 360
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 345 AGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATGAT 404
Query 361 GTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGATGAACTGAGTGCC 420
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 405 GTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTGCC 464
Query 421 ATATTAGGTGAGAAACTATCAGCAGAAGATGAAGAAGATATCTTAGCAGAATTCGACAAC 480
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 465 ATATTAGGTGAGAAACTATCAGCGGAAGATGAAGAAGAGATCTTAGCAGAATTCGACAAC 524
Query 481 CTAGAAAGTCAGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTTGTGCCT 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 525 CTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTCATGCCT 584
Query 541 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 644
Query 601 GCAGAAATCACTCCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 654
| | || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 G-A-AAC-CACTTCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 695
> AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434
FORWARD LENGTH=1074
Length=1074
Score = 516 bits (279), Expect = 1e-145
Identities = 368/411 (90%), Gaps = 6/411 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAATTTGTTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTTTC 59
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 167 ATGGGGAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC 225
Query 60 TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCA-ACAGCTTGAGAAAGTAATTG 118
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 226 TCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGA-AGCTTGAGAAAGTAATTG 284
Query 119 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 178
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 285 AAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGAAAGGACAGAGCTTTGT 344
Query 179 TAGCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 238
||||||||| |||||| || || ||||||||||| ||||||||||| ||||| ||| |||
Sbjct 345 TAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAAGTGGATCAATGGGTCA 404
Query 239 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAG-CAGTCTTT 297
||||||| ||||||||||| ||||||| |||||||| ||||| || |||| |||| |||
Sbjct 405 TCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAACA-AAAGGCAGTGTTT 463
Query 298 GAGAGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGAT 357
|||||||||||||| |||| ||||| |||||||| ||||| || || | ||||||||
Sbjct 464 GAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAATTGGACCTTGAT 523
Query 358 GATGTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGAT 408
||||||||||||||||||||||| |||||||| || || ||||| || |||
Sbjct 524 GATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTATCAAGAT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5