BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325490
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09380.1 | Symbols: | RNA polymerase III RPC4 | chr5:291131... 1260 0.0
> AT5G09380.1 | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136
REVERSE LENGTH=819
Length=819
Score = 1260 bits (682), Expect = 0.0
Identities = 776/821 (95%), Gaps = 7/821 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCAGAAACCACCAGTACGAAAGATGAAATTTGCCCCAAAAGCTCC-CCCAAAACG 59
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||
Sbjct 1 ATGGAGCAGAAACCACCAGTACGGAAGATGAAGTTTGCCCCAAAAGCTCCACCC-AAACG 59
Query 60 TGTGCCAAAACCTGAAGTTAAACCTGAAGTGGTTGAGAATGATAGTAATAGTGCACAAGC 119
||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 60 TGTGCCAAAACCTGAAGTTAAACCTGAAGTGGTTGAGGATAATAGTAACAGTGCACAAGC 119
Query 120 CTTGGAATTGCTACGGAGAGTAAATGAAAGATCATTGCGCAAGCCAAAAGCGGACAAGAA 179
| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCGGAATTGCTACGCAGAGTTAATGAAAGATCATTGCGCAAGCCAAAAGCGGACAAGAA 179
Query 180 AGTTCCTGCTTCTCGAGTTGCTTGGATGGGGGGAGTGGTGAATTCAACCAGATCAAATAA 239
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 AGTTCCTGCTTCTCAAGTTGCTTGGTTGGGGGGAGTGGTGAATTCAACCAGATCAAATAA 239
Query 240 GTACCTCAGTGGATCAAATGGTGCTTATGGATCAACCTCTACTCAGGAGATAGAGTATAA 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTACCTCAATAGATCAAATGGTGCTTATGGATCAACCTCTACTCAGGAGATAGAGTATAA 299
Query 300 AGAACCGTGGGATTACTACAGCTATTACCCGATCACACTTCCAATGAGGAGACCGTACGC 359
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 AGAACCATGGGATTACTACAGCTATTACCCTATCACACTTCCAATGAGGAGACCGTATGC 359
Query 360 AGGCGATCCAGAGGTTCTTGACGTGGAGGAGTTTATGCAGGCTGCAGGAAATCATGAAGA 419
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 360 AGGAGATCCAGAGGTTCTTGACGTGGAGGAGTTTATGCAGGCTGGAGGACATCATGAAGA 419
Query 420 TTCACTTAACACAGCTGCTAATCTTGGTCTAATGGAAGATAGTGGAGAACAGAAAATGCT 479
||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 420 TTCACTTAACACAGCCGCTAATCTCGGTCTAATGGAGGATAGTGGAGAACAGAAAATGTT 479
Query 480 TTTTATGAGGTTACCTTCTGTTCCTTTGGCATCAACACCAACAGAAAACCGTGAAACAAA 539
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TTTTATGAGGCTACCTTCTGTTCCTTTGGCATCAACACCAACAGAAAACCTTGAAACAAG 539
Query 540 GCCAAATATCAGAGGCCCCGTT---CAGAAGACTGTTGATTTAAAAGCCTTGCCAGAAGG 596
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GCCAAATATCAAAGGCCCCGTTGAGAAGAAGACTGTTGATTTAAAAGCCTTGCCAGAAGG 599
Query 597 TTTCATGGGCAAACTACTAGTCTACAAAAGTGGTGCTGTCAAGATGAAAC-TGGGTGAAG 655
|| |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 600 TTACATGGGCAAACTGTTAGTCTACAAAAGTGGTGCTGTCAAGATGAAACTTGGG-GAAG 658
Query 656 TGCTTTACGATGTAAGCCCGGGGTTGAAGAGCGAGTTTGCACAGGATGTGATGGTGGTTA 715
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TGCTTTATGATGTAAGCCCAGGGTTGAAGAGCGAGTTTGCACAAGATGTGATGGTGGTTA 718
Query 716 ACACAGAGCAGAAGAATTGCTGTCTGGTTGGAGATGTGTACAAGCATGCAGTTTTGACTC 775
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACACAGAGCAGAAGAACTGTTGTCTGGTTGGAGATGTGTACAAGCATGCAGTTTTGACTC 778
Query 776 CTGATATTGATTCAATCTTGAAAAATATCGAAAATATTTGA 816
||||||||||||||||||||||| ||||||||||||| |||
Sbjct 779 CTGATATTGATTCAATCTTGAAAGATATCGAAAATATATGA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5