BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325494
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09420.1 | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM... 2780 0.0
> AT5G09420.1 | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64
| translocon at the outer membrane of chloroplasts 64-V
| chr5:2928316-2931949 FORWARD LENGTH=2011
Length=2011
Score = 2780 bits (1505), Expect = 0.0
Identities = 1662/1738 (96%), Gaps = 10/1738 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAATACGCTTACTTTGATTCAAAGCAATGCCTCGAATCCCAAGGTTTGGGTGGTG 60
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGTCGAATACGCTTTCTTTGATTCAAAGCAATGCCTCGAATCCCAAAGTTTGGGTAGTG 60
Query 61 ATCGGCGTGACGGTGGCCGGGATCGTGATTTTGGCGGAGACCCGGAAGCGGCGGATTAAA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 61 ATCGGCGTGACGGTGGCCGGGATCGTGATTCTGGCGGAGACCCGGAAGCGGCGGATTAGA 120
Query 121 GCCCTTAGAGAAGAAGACTTTGGTGCTTTCTTAGATCGTTTTGAGCTTCTTCCTTTTCCT 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 GCCCTTAGAGAAGAAGACTTTGGTGCTTTCTTAGATCGTTTCGAGCTTCTTCCTTTCCCT 180
Query 181 CCGCCGCCTCCTCCTGCAGCTAAACAATCTCTCTCTGCTCTTACCTTCTCCATCTCCGAC 240
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CCGCCTCCTCCTCCTGCTGCTAAACAATCTCTCTCTGGTCTTACCTTCTCCATCTCCGAC 240
Query 241 GCGTTCGATGTTAAGGATTATATCACAGGATTTGGTAGTCCACAATGGAAGAAGACTCAC 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GCGTTCGATGTTAAGGATTATATCACAGGATTTGGTTGTCCACAATGGAAGAAGACTCAT 300
Query 301 GAGGCTGCTGAGAAAACTGCTGTGGTTGTCACAACTCTCTTGAAAAATGGAGCTACTTGT 360
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 GAGGCTGCTGAGAAAACTGCTGTGGTTGTCACGACGCTCTTGAAAAATGGAGCTACTTGT 360
Query 361 GTTGGCAAGACTATCATGGATGAGCTGGGTTTTGGGATTATTGGAGAAAACAAGCACTAT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGCAAGACTATAATGGATGAGCTGGGTTTTGGGATTATTGGAGAAAACAAGCACTAT 420
Query 421 GGCACTCCTATTAATCCATTGATGCCATCTAATGTTCCTGGAGGATGTTCCAGTGGCTCA 480
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 GGAACTCCTATTAATCCATTGATGCCAGATAATGTTCCTGGAGGATGTTCCAGTGGCTCA 480
Query 481 GCAGTTTCTGTTGGGGCTGAACTCGTTGACTTTTCACTTGGGATTGATACCACTGGCGGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCAGTTTCTGTTGGGGCTGAACTCGTTGACTTTTCACTTGGGATTGATACCACTGGTGGT 540
Query 541 GTTAGAATCCCAGCAGCATTTTGTGGTATTCTCGGTTTTCGACCATCTCAGGGGACTGTT 600
|||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GTTAGAGTCCCAGCAGCCTTTTGTGGTATTCTTGGTTTTCGACCATCTCAGGGGACTGTT 600
Query 601 TCTTCTGTTGGAGTTTTGCCCAATTCTCAGAGCCTAGAGACTGTTGGATGGTTTGCCAGT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 TCTTCAGTTGGAGTTTTGCCCAATTCTCAGAGCCTAGAGACTGTTGGATGGTTTGCCTCT 660
Query 661 GACCCATCCGTTTTGTGTCAAGTCGGACATGCCTTGCTAAACCTGAGTGCAGTAGCACAT 720
|| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||
Sbjct 661 GATCCATCCGTTTTGTGTCAAGTTGGACATGCCTTACTAAATCTGAGTGCAGTAACACAT 720
Query 721 AGAAGGCAAAGATCTTTAATCTTTGCTGATGATTTATTCGAGCTCTCTGACATTCCTAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAGGCAAAGATCTTTAATCTTTGCTGATGATTTATTCGAGCTCTCTGACATTCCTAAG 780
Query 781 CAAAAGTCGGTGCACGTTGTCAGAAAGGCAATCGAAAATCTATCTGGCTACCAGACTCCG 840
|||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 781 CAAAAGTCGGTGCAAGTTGTCAGAAAGGCAATCGAGAATCTATCTGGCTACAAGACTCCA 840
Query 841 AAACATGTTAACGTTGGCCAATATGTCGCTTCAAATGTACCAAGTCTTGCGGAATTCTGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAACATGTTAACGTTGGCCAATATGTCGCTTCAAATGTACCAAGTCTTGCGGAATTCTGT 900
Query 901 GAGCAATCTGGAAAATCCCAAAATTCTGCATCAACTTTGAAGG-CTCTTTCATCTGTGAT 959
||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||
Sbjct 901 GAGCAATCTGGGAAATCCCAAAATTCAGCATCAACTTT-AAGGGCTCTTTCATCTGTGAT 959
Query 960 GTTGGCAATACAAAGGCATGAGTTCAAAACAAATCATGAAGAATGGTCGCAAACATGCAA 1019
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 GTTGGCTATACAAAGGCATGAGTTCAAAACAAATCATGAAGAATGGTGGCAAACATGCAA 1019
Query 1020 ATCCTTTCTAGGGCCAAGATTTTCCAATGATGTTGTTACAGCTCTGAAGAGCAGAAACGA 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 ATCGTTTCTAGGGCCAAGATTTTCCAATGATGTTGTTACAGCTCTGAAGAGCAAAAACGA 1079
Query 1080 GAGCATTAAATCGCTCTACAGAGTGAAAACTGAGATGCGGGCCACAATTCAAAGCCTTCT 1139
|||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1080 GAGCATTAAATCCCTCTACAGAGTGAAAAATGAGATGCGGGCCACCATTCAAAGCCTTTT 1139
Query 1140 AAAGGAAGATGGAATTCTGGTAATCCCCACAGTCGCTGATCCCCCTCCAAAGCTTAACAC 1199
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1140 AAAGGAAGATGGAATTCTGGTAATCCCCACAGTTGCTGATCCCCCTCCAAGGCTTAACAC 1199
Query 1200 AAAGA-ACAAGAACTCTTTGAATGAGTTTCTTGATCGAACTTACGCACTCTCCAGCATTG 1258
||||| | || || ||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 1200 AAAGAGA-AATAAATCTTTGAATGAGTTTCTTGATCGTACTTATGCACTCTCCTGCATTG 1258
Query 1259 CTAGCATGTCTGGATGTTGTCAGGTTACAATTCCTTTAGGGCAACATGGTGATCGTCCAA 1318
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1259 CAAGCATGTCTGGATGTTGTCAGGTTACAATTCCTTTAGGGGAACATGGTGATCGTCCAA 1318
Query 1319 TATCCGTGTCGTTTCTTACTTACTATGGAGGTGATAAGTTCCTTCTCGATACAA-TCCTC 1377
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1319 TATCCGTGTCGCTTCTTACTTACTATGGAGGTGATAAGTTCCTTCTCGATACAACTC-TC 1377
Query 1378 GATGTATATGCATCCCTTCAAGACCAAGCCAAACTTGCATCCAACTTAGCTCCAGTGTCT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GATGTATATGCATCCCTTCAAGACCAAGCCAAACTTGCATCCAACTTAGCTCCAGTGTCT 1437
Query 1438 GACACCAATGGTAATATGGAGGCTTCTGAAGTTATGAAGGAAAAGGGCAATGCTGCATAC 1497
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 GACACCAATGGTAACATGGAGGCTTCTGAAGTTATGAAAGAAAAGGGCAATGCTGCATAC 1497
Query 1498 AAGGGGCGACAATGGAATAAAGCAGTAAACTTTTATACTGAAGCTATAAAATTAAATGGA 1557
|||||| |||||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 1498 AAGGGGAAACAATGGAATAAGGCGGTAAACTTTTATACAGAAGCTATAAAATTGAATGGA 1557
Query 1558 GCAAATGCTACTTACTT-TTGCAATAGAGCTGCAGCTTTCTTGGAACTTGGCTGCTTCCA 1616
|||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1558 GCAAATGCTACTTA-TTATTGCAATAGAGCTGCAGCTTTCTTGGAACTTTGCTGCTTCCA 1616
Query 1617 ACAAGCCGAACAAGATTGTAC-AGAGGCCATGCTGATCGATAAGAAGAATGTGAAGGCAT 1675
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1617 ACAAGCCGAACAAGATTGTACCA-AGGCCATGTTGATCGATAAGAAGAATGTGAAGGCAT 1675
Query 1676 ATTTGAGACGAGGGACTGCCAGAGAATCACTTGTCCGGTACAAGGAAGCTGCTGCAGA 1733
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1676 ATTTGAGACGAGGGACTGCTAGAGAATCACTTGTACGGTACAAGGAAGCTGCTGCAGA 1733
Score = 113 bits (61), Expect = 5e-24
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1784 CTGCAGATTTCAGGCACGCATTGGTCCTTGAACCACAGAACAAGACAGCGAAGGCTGCTG 1843
|||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 1727 CTGCAGATTTCAGGCACGCATTGGTCCTTGAACCACAGAACAAGACGGCAAAGGTTGCTG 1786
Query 1844 AAAAGCGACTCCGAAA 1859
| ||| ||||||||||
Sbjct 1787 AGAAGAGACTCCGAAA 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92369002800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5