BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325508
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09580.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1718 0.0
> AT5G09580.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53345.1);
Has 53 Blast hits to 53 proteins in 12 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2972639-2974776
FORWARD LENGTH=1520
Length=1520
Score = 1718 bits (930), Expect = 0.0
Identities = 1045/1102 (95%), Gaps = 2/1102 (0%)
Strand=Plus/Plus
Query 1 ATGATTTTCCGGCGATTCTCCGGGAGAATTCTGCCGGCGATTTCCGACTCTTGTAAAATT 60
||||||||||||||||||||||||||| |||| | ||||| |||||||||||||| ||
Sbjct 82 ATGATTTTCCGGCGATTCTCCGGGAGATTTCTAACTGCGATCCCCGACTCTTGTAAACTT 141
Query 61 CAATTCGAAGCTAAACGGAGTTTACGATCTGATGCGGCGCTCGAAGCCATAACCAATGCG 120
|||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 142 AAATTCGAAGCTAAACGGAGTTTCCGATCTGATGCGGCGCTCGAAGCCATAGCTAATGCA 201
Query 121 TTAGAAGAGAAAGTACCAAACCTAGTGCTATACAATTATCCCTCCTTCTCCGGCGCTTTC 180
||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 202 TTAGAAGAGAAAGTACCAAACTTAGTGTTATACAATTATCCTTCCTTCTCCGGCGCTTTT 261
Query 181 TCAGCTCTCTTCGCTCATCTCTACCACTCTCGCCTCCGTCTTCCTTGTCTTATCTTACCC 240
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 262 TCAGCTCTCTTCGCTCATCTCTACCACTATCGACTCCGTCTTCCTTGTCTCATCTTACCC 321
Query 241 TTTTCTTCCGTCATACCCTTCAGGATTGAAGATTTGTGTTTGGAGGGGTTCGAGAGATGT 300
||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||| |||
Sbjct 322 TTTTCTTCCCTCATACCCTTTAGGGTTGAAGATTTGTGTTTGGAGGGGTTTGAGAGGTGT 381
Query 301 TATCTACTTGATTTTGTTGTTCCCAAAGATTTTGCTTGCCAGAAAACAGCTTGCGAGATC 360
|| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 382 TACCTTCTCGATTTTGTTGTTCCAAAAGATTTTGCTTGCCAGAAAACAGCTTGCGAGATC 441
Query 361 ATATGCTTTGATCACCGGAACTCGGCATTGACAAGGATTGGCTCAATAAAGGAAGAGCAC 420
| ||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 442 GTTTGCTTTGATCATCGGAACTCCGCATTGAAAAGGATTGGCTTAATAAAGGAAGAGCAC 501
Query 421 AAGAAGAGGCTTAAGA-TTATTGTTGATACTGAAACGAGTAGCTCAAAGGCTGTGTATAA 479
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 502 AAGAAGAGGCTTAAGATTTA-TGTTGATACTGAAACTAGTAGCTCAAAGGCTGTGTATAA 560
Query 480 ATATTTCTCCAGTAAACTCACAGATAAAACATCTTCTGAGGTAGAAGCTCTCAGTTTGCT 539
||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 561 ATATTTCTCTAGTAAACTCACAGATCAAAGATCTTCTGAGGTAGAAGCTCTCAGTTTGCT 620
Query 540 AAGTGTAGAAGACAAAAGTCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGATCT 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGTGTAGAAGACAAAACTCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGATCT 680
Query 600 TCGACGATGGATGTTACCAGATATCAAAGCTTTCAGCTTTGGCCTTAAAGATTGGCGCTC 659
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 681 TCGGCGATGGATGTTACCAGATATCAAAGCTTTCAGCTTTGGTCTTAAGGATTGGCGCTC 740
Query 660 AAGGATCAATTGTATCACCAATCCTTACATGTACGAACAGTTGTTGAAAATAAGTTCGGC 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 741 AAGGATCAATTGTATCATCAATCCTTACATGTACGAACAGTTGTTGAAAATAAGTTCAGC 800
Query 720 GGATCTCATTGCTTATGGGAATTCATATTTTTCATCTCGTCTTCTTGATGCAAAGAAACT 779
|||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 801 GGATCTCATTGCGTATGGGAATTCGTATTTTTCATCTCGTCTTATTGATGCAAAGAAACT 860
Query 780 GCTAAAGCTGAATAAAGCTTTCAAGATCAGATTGGGAAGAGGGTTATATGGAGAGTGCCT 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 GCTAAAGCTGAATAAAGCTTTCAAGATTAGATTGGGAAGAGGGTTATATGGAGAGTGCCT 920
Query 840 GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GGGAATGCGCGCAGATGGTAACCATCAACTAAGCGATGAACTTGGCAAGCTTCTTAGTCT 980
Query 900 ACAAAGTTCTGCAGCTGGTCTCAGGCCAATAGGAGCTATTACATTTATGCAAAGGAATAA 959
||||||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||
Sbjct 981 ACAAAGTTCTGCAGCTGGTCTGAGGCCTATAGGAGCTGTTACATTTGTGCAAAGGAATAA 1040
Query 960 TCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCGATACATCCGAAGTTGCTAAGGC 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1041 TCTCAAAATGTGCTTGAGAAGTACCGATGCTATAACCAATACATCCGAAGTTGCTAAGGC 1100
Query 1020 TTATGGAGGAGGTGGAACATCTAGTTCAAGCTCGTTTATCATAAGAATGGATGAATATAA 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TTATGGAGGAGGTGGAACGTCTAGTTCAAGCTCGTTTATCATAAGAATGGATGAATATAA 1160
Query 1080 TCAATGGATTTCGACGCTTTGA 1101
|||||||||||||| |||||||
Sbjct 1161 TCAATGGATTTCGAAGCTTTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5