BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325521
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09760.1 | Symbols: | Plant invertase/pectin methylesterase... 2741 0.0
> AT5G09760.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:3032375-3034543 FORWARD LENGTH=1906
Length=1906
Score = 2741 bits (1484), Expect = 0.0
Identities = 1655/1737 (95%), Gaps = 14/1737 (1%)
Strand=Plus/Plus
Query 8 CTTCGAAACTCCATCATCATCCTCACCGCAGAAAATCCCCAATCCGCTGcttctgtctct 67
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1 CTTCGAAACTCCATCATCATCCTCACCGCAGAAAATCCCCAATACGTTGCTTCTGTCTCT 60
Query 68 taatcatcaccatgtcctccattctcatccttctcttctctctcttcctcttctcctctc 127
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAATCATAACCATGTCCTCCATTCTCATCCTTCTCTTCTCTCTCTTCCTCTTCTCCTCTC 120
Query 128 cctcctcctcctccCGTCACCACCACCACCACAATTCCCGCCAATCAC-CCTCCGG-CGA 185
|||||||||||||||||||||||||||||||||||| ||| | | ||| |||||| | |
Sbjct 121 CCTCCTCCTCCTCCCGTCACCACCACCACCACAATT-CCGGCGA-CACTTCTCCGGTC-A 177
Query 186 CA-CCTCTCCGGTCAATCCCGCGCCGTCTCAGATCCGTCTCGCTTGTAACGCAACTCGTT 244
| ||| | | ||| || | ||||| |||||||||||||||||||||||||||||||||
Sbjct 178 -ATCCT-T-C-GTC-GTCTCTCGCCG-CTCAGATCCGTCTCGCTTGTAACGCAACTCGTT 231
Query 245 ACCCAGACCAATGCGTCTCTTCACTATCCGAACCGGGTCGGGTTCCTCCGGATCCTAAAC 304
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 232 ACCCAGACCAATGCGTCTCTTCCCTATCCGAACAGGGTCGGGTTCCTCCGGATCCTAAAC 291
Query 305 CAATCCAGATCATCCACTCAGCGATCTCAATCTCATTCCAAAACCTCAAAACCGCCCAAT 364
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 CAATCCAGATCATTCACTCAGCGATCTCATTCTCATTCCAAAACCTCAAAACCGCCCAAT 351
Query 365 CAAAAATCAAGTCTATCGTAGACTCGTCCGTAGGTAATCTAAACCGTACAAACGCCGCGA 424
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 CAAAAATCAAGTCTATTGTAGACTCGTCCGTAGGGAATCTAAACCGTACAAACGCCGCGA 411
Query 425 ACACGTGTCTCCAGCTTCTCACTTACTCCCAGCACCGCACTCAATCGACGGATCAAGCTT 484
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 ACACGTGTCTCCAGCTTCTCACTTACTCCGAGCACCGCACTCAATCGACGGATCAAGCTT 471
Query 485 TGACACGTGGCAAAATCAAAGACGCTCGAGCTTGGATGAGCGCTGCTCTAGTGTACCAGT 544
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TAACACGTGGCAAAATCAAAGACGCTCGAGCTTGGATGAGCGCTGCTCTAGTGTACCAGT 531
Query 545 ACGATTCATGGTCAGCGCTCAAGTACGTCAACGACACGAGCCAAGTCGGTGATACGATGT 604
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 532 ACGATTCATGGTCAGCGCTCAAGTACGTCAACGACACGAGCCAAGTAGGTGAAACGATGT 591
Query 605 CGTTTCTAGACGGACTTATCCACGTCAGCAGCAACGCGCTTAGCATGATGGTTTCGTACG 664
||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 592 CGTTTCTCGACGGACTTATCCACGTCACCAGCAACGCGCTTAGCATGATGGTATCGTACG 651
Query 665 ATAACTTCGGAGACAACGTCGCGTCGTGGACTTACCCAGAAACGGAGCGTGACGGGTTTT 724
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 652 ATAACTTCGGAGACAACGTCGCGTCGTGGACTTACCCAGCAACGGAACGTGACGGGTTTT 711
Query 725 GGGAGAAGACTGGGCCGGGTTTGGGCTCGGATCCGAGTACAGGGCTTAATTTGGGTTTTC 784
|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 712 GGGAAAAGACTGGGCCTGGTTTGGGCTTAGATCCGAGTACAGGGCTTAATTTGGGTTTTC 771
Query 785 CTTCCGGTTTAAAAGAAGACGTGACGGTGTGTAGAGACGGAAAATGCGGTTACAAGACGG 844
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 CTTCCGGTTTAAAAGAAGACGTGACGGTGTGTAAAGACGGAAAATGCGGTTACAAGACGG 831
Query 845 TGCAAGACGCCGTTAACGCCGCGCCGGAGGATATCGGAATGCGTAAGTTCGTTATAAGGA 904
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 832 TGCAAGACGCCGTTAACGCTGCGCCGGAGGATAACGGAATGCGTAAGTTCGTTATAAAGA 891
Query 905 TTAGCGAAGGAGTGTACGAGGAGAACGTTATTGTTCCGTTTGAGAAGAAGAACGTAGT-T 963
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 892 TTAGCGAAGGAGTCTACGAGGAGAACGTTATTGTTCCGTTTGAGAAGAAGAACGTTGTGT 951
Query 964 TTCATCGGTGACGGTATGGGCAATACGGTCATTACAGGTTCGTTAAACGCTGGTATGCCT 1023
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 952 TT-ATCGGTGACGGTATGGGCAAAACGGTCATTACAGGTTCGTTAAACGCCGGTATGCCT 1010
Query 1024 GGGATCACTACGTACAACACTGCAACTGTCGGAGTGGTAGGAGATGGATTTATGGCTCGT 1083
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1011 GGGATCACTACGTACAATACTGCAACTGTCGGAGTGGTAGGAGATGGATTCATGGCTCGT 1070
Query 1084 GATCTAACATTCCAGAACACGGCGGGACCAGACGCTCATCAAGCGGTGGCGTTTAGATCC 1143
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1071 GATCTAACGTTCCAGAACACGGCGGGACCAGACGCTCACCAAGCGGTGGCGTTTAGATCC 1130
Query 1144 GACAGCGATTTTTCTCTGCTTGAGAATTGTGAGTTCCTTGGGAACCAAGACACTCTCTAT 1203
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 GACAGCGATTTTTCTCTGATCGAGAATTGCGAGTTCCTTGGGAACCAAGACACTCTCTAT 1190
Query 1204 GCCCATGGTCTTCGCCAGTTCTACAAAAACTGCCGTATCCAAGGAAATGTTGACTTCATC 1263
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1191 GCCCATGGTCTTCGTCAGTTCTACAAAAACTGTCGTATCCAAGGAAATGTTGACTTTATC 1250
Query 1264 TTTGGCAATTCAGCTGCTGTCTTCCAAGACTGTGAAATTTTGATTGCACCGCGTCAACTT 1323
||||| |||||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 1251 TTTGGGAATTCAGCTGCTGTCTTCCAAGACTGTGAAATCCTAATCGCACCGCGTCAAATT 1310
Query 1324 AACCCCGAAAAGGGCGAGAAAAACGCAGTCACTGCCCAAGGAAGAATCGACCCGTCACAA 1383
||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1311 AACCCTGAAAAGGGCGAGAAAAACGCAGTCACTGCCCAAGGAAGGATTGACCCGTCCCAG 1370
Query 1384 TCCACTGGTTTCGTGTTTTTGAACTGTTTGATTAACGGAACAGAGGAGTATATGAAGCTG 1443
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1371 TCCACGGGTTTCGTGTTCTTGAACTGTTTGATTAACGGAACAGAGGAGTACATGAAGCTG 1430
Query 1444 TTTAAAGCTAACCCTAAGGTGCATAAGAACTTCTTGGGGAGGCCATGGAAAGATTACTCA 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TTTAAAGCTAACCCTAAGGTGCATAAGAACTTCTTGGGGAGGCCATGGAAAGATTACTCA 1490
Query 1504 AGGACTGTGTTTATAGGTTGTAATTTAGAGGCTTTGATTACTCCTGATGGATGGTTACCG 1563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGGACTGTGTTTATAGGTTGTAATTTAGAGGCTTTGATTACTCCTGATGGATGGTTACCT 1550
Query 1564 TGGAGCGGGGATTTCGCGCTGAAGACGCTTTATTACGGTGAATCTAAGAATACAGGTCCG 1623
|||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 1551 TGGAGCGGGGATTTCGCGCTCAAGACACTTTATTACGGTGAATCTAAGAACACGGGTCCG 1610
Query 1624 GGATCAGATAGGTCACAAAGGGTTTCATGGAGCAGTGAGATACCGGACGAGCATGTTCAT 1683
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1611 GGATCAGATAGGTCACAAAGGGTTTCATGGAGCAGTCAGATACCGGACGAGCATGTTCAT 1670
Query 1684 GTGTATTCGCTGGCTAACTTTATTCAGGCTGAGGAGTGGGCTTCGATGTCTGCTTAA 1740
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1671 GTGTATTCGGTGGCTAACTTTATTCAGGCTGATGAGTGGGCTTCGATGTCTGCTTAA 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5