BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325538
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09910.1 | Symbols: | Ras-related small GTP-binding family ... 1546 0.0
AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding fam... 784 0.0
> AT5G09910.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:3093272-3095156 FORWARD LENGTH=1130
Length=1130
Score = 1546 bits (837), Expect = 0.0
Identities = 948/1003 (95%), Gaps = 2/1003 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAACATGTCGTCGCGCCATTATGC 60
||| |||||||||||||||||| |||||||||||||||||| | || ||||||||||||
Sbjct 1 ATGCGGTTTTGGAGGGAACGTGGCAGGGAAAATAAGGAACATATGGTAGCGCCATTATGC 60
Query 61 GGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAGTCATCTCTTCTTCAT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 61 GGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAATCATCTCTTGTGCAT 120
Query 121 CTCATTGTCAAAGGCTCCTCTATCGTTCGCCCTTCTCAAACTATTGGATGTACAGTTGGT 180
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 CTCATTGTCAAAGGCTCCTCTATTGTTCGCCCATCTCAAACTATTGGATGTACAGTTGGT 180
Query 181 GTCAAGCACTTAGCTTACGCAAGTCCTGCTAGTTCTTCAAGTAGCATTAAAGGTGACTCA 240
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTCAAGCACTTAACTTACGCAAGTCCTGCTAGTTCTTCAAGTATCATTAAAGGTGACTCA 240
Query 241 GAGAGAGATTTCTTTGTCGAACTTTGGGATGTATCTGGTCATGAACGATACAAAGATTGC 300
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 GAGAGAGATTTCTTCGTCGAACTTTGGGATGTTTCAGGTCATGAACGATACAAAGATTGC 300
Query 301 CGCTCACTGTTCTATTCACAAGTTAATGGAGTTATCTTTGTTCATGATCTTTCTCAACGA 360
||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| |
Sbjct 301 CGCTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCATGATCTTTCGCAAAGG 360
Query 361 AGAACAAAAACAAATTTGCAGAAATGGGCAGGTGAAGTTTCAGTAAATGGGGCGTTTTCA 420
| |||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 361 ACTACAAAAACTAATTTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGAGTTTTCA 420
Query 421 GCTCCACTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCTTACATTGTTATTGGAAAC 480
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 421 GCTCCCCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTATTGGAAAC 480
Query 481 AAAGCTGATATTGCTGC-AAAGGAAGGAACAAGTGGAAGCAGTGGCAATCTTGTTGATGC 539
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 481 AAAGCTGATATTGCTGCCAAAGGA-GGAACAAATGGAAGCAGTGGCAATCTTGTTGATGC 539
Query 540 AGCTCGTCAGTGGGTTGAGAAGCAAGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCTC 599
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 AGCTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCCCATAGTGATGAACTTCCTCTCTC 599
Query 600 TGAGAGCTTCCCTAGCAATGGTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACAA 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACAA 659
Query 660 AGAAGCTCTGAACAAATTTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGATGAACT 719
||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 AGAAGCTCTGACCAAAATTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGACGAACT 719
Query 720 ACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCCTGGACCTTCCCAGCGGTTAGACGAGGG 779
|||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 720 ACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCATGCACCTTCCCAGCGGTTAGATGAGGG 779
Query 780 CACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGGAAGGAGATCCTTACAA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGGAAGGAGATGCTTACAA 839
Query 840 GTATAACACATTACCACAACACAACCTCACGCAGCCTCCTACACTCTATCCGCAGCAACC 899
|||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 840 ATATAACACATTACCGCAACACAATCTCATGCAGTCTCCTACACTCTATCCGCAGCAACC 899
Query 900 ACCTGACCGTTACAGTTACGCCATTCCGAGATTCTCTCTTTCCAGTGTAGAGGAGACCAA 959
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 900 ACCTGACCGTTACAATTACGCTATTCCGAGATTCTCTCTTTCCAGTGTAGAGGAAACCAG 959
Query 960 CAATGGTAATGGCAGGTCTAAGCCGATGGATATTAACGTTTGA 1002
||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 960 CAATGGTAATGGCAGGTCTAAGCGGATGGATATTAACGTCTGA 1002
> AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding family
protein | chr5:25910279-25912896 FORWARD LENGTH=1857
Length=1857
Score = 784 bits (424), Expect = 0.0
Identities = 845/1042 (81%), Gaps = 53/1042 (5%)
Strand=Plus/Plus
Query 1 ATGAGGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAACATG-TCGTCGCGCCATTATG 59
|||| ||||||||||||||||||||||||||||||||| || | || | |||||||||||
Sbjct 558 ATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCA-GATCTTAGCGCCATTATG 616
Query 60 CGGCCAAATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAGTCATCTCTTCTTCA 119
|| ||| ||||||| ||||| |||||||| |||||||| ||||| |||| ||| | ||
Sbjct 617 TGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 676
Query 120 TCTCATTGTCAAAGGCTCCTCTATCGTTCGCCCTTCTCAAACTATTGGATGTACAGTTGG 179
||||| |||||| || ||||| |||||||| ||||||| |||||||| || |||||
Sbjct 677 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGG 736
Query 180 TGTCAAGCACTTAGCTTACGCAAGTCCTGCTAGTTCTTCAAGTAGCATTAAAGGTGACTC 239
|||||||||| || | |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 737 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 796
Query 240 AGAGAGAGATTTCTTTGTCGAACTTTGGGATGTATCTGGTCATGA-ACGATACAAAGATT 298
|||||||||||||||||| ||||| ||||||||||| || ||||| | ||||||||||||
Sbjct 797 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGA-GATACAAAGATT 855
Query 299 GCCGCTCACTGTTCTATTCACAAGTTAATGGAGTTATCTTTGTTCATGATCTTTCTCAAC 358
|||| |||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 856 GCCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAA 915
Query 359 GAAGAACAAAAACAAATTTGCAGAAATGGGCAGGTGAAGTTTCAGTAAATGGGGCGTTTT 418
||||||||||||| | ||||||||||||||| ||| ||| ||| | |||| | ||||
Sbjct 916 GAAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTT 975
Query 419 CAGCTCCACTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCTTACATTGTTA-TTGGA 477
||||||| ||| | || || || || ||||||||||| || || ||||||| || ||||
Sbjct 976 CAGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTG-TAGTTGGC 1034
Query 478 AACAAAGCTGATATTGCTGCAAAGGAAGGAACAAGTGGAAGCAGTGGCAATCTTGTTGAT 537
|||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1035 AACAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGAT 1094
Query 538 GCAGCTCGTCAGTGGGTTGAGAAGCAAGGTCTGCTTCC--C--CATAGTGATGAACTTCC 593
||||||||||| |||||||||||||||||| ||||||| | || ||||| || || ||
Sbjct 1095 GCAGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCA-AGTGAGGATCTCCC 1153
Query 594 TCTCTCTGAGAGCTTCCCTAGCAATGGTGGTCTCATAATGGCTGCCAAGGAAGCTAGATA 653
||||| ||| ||||| ||| | ||||| ||||||||| ||||||||| ||| | |||||
Sbjct 1154 TCTCTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATA 1213
Query 654 TGACAAAGAAGCTCTGAACAAATTTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGA 713
|| || |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1214 CGATAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGA 1273
Query 714 TGAACTACCGTCGCCTTCTTCAGCATGGTCTCTTTCCCCTGGA-CC----T--TC--C-C 763
|||||| || || ||||| |||||||| |||| || || || | || | |
Sbjct 1274 TGAACTGCCA--GCAG-CTTCACCATGGTCTATTTCGCC-GGTTCCAACGTCATCATCGC 1329
Query 764 AGCGGTTAGACGAGGGCACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTAAGGG 823
| |||||||||||| ||||||||||| ||||| || || || ||||||| |
Sbjct 1330 AACGGTTAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCC--- 1386
Query 824 AAGGAGATCCTTACAAGTATAACA-CAT--TACCAC-A-----A-CACAAC-CT-C--A- 868
| |||||||| |||||||| |||| || |||||| | | |||||| | | |
Sbjct 1387 ATGGAGATCCATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAA 1446
Query 869 CGCAGCCTCCTACACTCTATCCGCAGCAACCACCTG---ACCGTT-ACAGTTACGCCATT 924
| | |||||| || ||||||||||| |||||| || ||| | | | ||| |||||
Sbjct 1447 CTCCGCCTCCCACGCTCTATCCGCAACAACCAG-TGTCCACCCCTGATAACTACACCATT 1505
Query 925 CCGAGATTCTCTCTTTCCAGTGTAGAGGAGAC--C-AACAATGGTAATGGCAGGTCTAAG 981
||||||| |||||||||||||||| | || || | |||||||| | || |||||| |||
Sbjct 1506 CCGAGATACTCTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAGGTCAAAG 1565
Query 982 CCGA-TGGATATTAACGTTTGA 1002
| || ||||||||||||| |||
Sbjct 1566 C-GAATGGATATTAACGTCTGA 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5