BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325545

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09980.1 | Symbols: PROPEP4 | elicitor peptide 4 precursor |...   344    2e-94


> AT5G09980.1 | Symbols: PROPEP4 | elicitor peptide 4 precursor 
| chr5:3122731-3123964 FORWARD LENGTH=541
Length=541

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 226/245 (92%), Gaps = 3/245 (1%)
 Strand=Plus/Plus

Query  6    GAGAGAAGGAGTTTCTTATTATCTATGGATCCCATTTAGGTTCATTCACCAAACTTTCCG  65
            ||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||| |
Sbjct  63   GAGAG-AGGAGTTTCTTATTATCTATGGATTCCTTTTAAGTTCATCCACCAAACTTTCGG  121

Query  66   ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCTTCTGATCATAGTTTCCCGAAAGA  125
            |||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||
Sbjct  122  ATCTCTTTTACTCAAGCTTCTCGGTTTGCGATCTCCATCTGATCATAGTTTTCCGGAGGA  181

Query  126  AGAGGAGGAGAAAGTTGAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCC-GGCAAAAAAGA  184
             | ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||| ||
Sbjct  182  TGGGGAGGAGGAAGTTAAGGTTGTGGAAGTGTCGTCGAGGGGTCTTCCCGGGAAAAA-GA  240

Query  185  ATGTACTGAAGAAGTCGAGAGAAAGTTCTGGCAAGCCGGGAGGCACCAACAAGAAGCCGT  244
            ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  241  ATGTACTAAAGAAGTCGAGAGAAAGTTCCGGCAAGCCGGGAGGCACCAACAAGAAGCCGT  300

Query  245  TTTAG  249
            |||||
Sbjct  301  TTTAG  305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5