BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325580
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4... 610 5e-174
AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase ho... 122 3e-27
> AT5G65270.1 | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog
A4A | chr5:26083328-26084714 FORWARD LENGTH=954
Length=954
Score = 610 bits (330), Expect = 5e-174
Identities = 570/685 (83%), Gaps = 20/685 (3%)
Strand=Plus/Plus
Query 7 AGTGGAGGAGGATACGGAGACCCGTCGCAGAAGATTGACTACGTCTTC-AAGCTGGTGTT 65
|||||||||||||||||||| ||||||||||||||||| || || ||| ||| |||||||
Sbjct 116 AGTGGAGGAGGATACGGAGATCCGTCGCAGAAGATTGATTATGTGTTCAAAG-TGGTGTT 174
Query 66 GATCGGAGACTCTG-GTGTTGGCAAATCGCAGATACTGTCTCGGTACGCGAGAAACGAGT 124
|||||| || || | | ||||| ||||| ||||||||| |||| || || ||| |||| |
Sbjct 175 GATCGGCGATTCCGCG-GTTGGGAAATCACAGATACTGGCTCGTTATGCTAGAGACGAAT 233
Query 125 TCAGCTTAGATTCCAAAGCTACCATCGGCGTCGAATTTCAAACTCGAACACTTGTTATCG 184
|||| || ||||| || || ||||||||||| || ||||| ||||| || ||||||||||
Sbjct 234 TCAGTTTGGATTCTAAGGCCACCATCGGCGTTGAGTTTCAGACTCGGACGCTTGTTATCG 293
Query 185 ACCATAAGAGTGTCAAAGCTCAGATCTGGGACACCGCCGGCCAAGAACGGTATAGAGCGG 244
| || |||||||| || |||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 294 ATCACAAGAGTGTTAAGGCTCAGATCTGGGATACCGCCGGCCAAGAACGATACAGAGCAG 353
Query 245 TGACGAGTGCGTATTACAGAGGAGCGGTTGGGGCGATGCTGGTTTACGACGTGACTAGAC 304
| || ||||| |||||| |||||||||||||||||||| |||| || ||| | || ||||
Sbjct 354 TAACAAGTGCATATTACCGAGGAGCGGTTGGGGCGATGTTGGTGTATGACATAACCAGAC 413
Query 305 GTCAAACATTTGATCATATCCCACGGTGGCTT-GAAGAATTGCGAAATAACGCAGACAAG 363
| ||||| ||||| ||||||||| | ||| || |||||| | || | | ||||| |||
Sbjct 414 GCCAAACCTTTGACCATATCCCAAGATGG-TTAGAAGAACTACGTGCTCATGCAGATAAG 472
Query 364 AACATTGTGATTATACTCGTTGGGAATAAGTCTGATCTTGAAGATCAACGAGCGATATCG 423
||||||||||| || || ||||||| ||||| ||||||| ||||||||||| ||| ||
Sbjct 473 AACATTGTGATAATCCTTATTGGGAACAAGTCAGATCTTGTGGATCAACGAGCTATACCG 532
Query 424 ATGGAAGATGCTAAGGAATTCGCGGAGAAAGAAGGTCTT-TTCTTCTTGGAGACATCAGC 482
| |||||||| || ||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 533 ACAGAAGATGCGAAAGAATTTGCGGAGAAAGAAGGT-TTGTTCTTCTTGGAGACATCTGC 591
Query 483 -TCTAAACGCAGTCAACGTGGAGAGTGCTTTCTCCACTGTTTTGACTGAGATTTTCAACT 541
| | |||||| ||| || ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 592 AT-TTAACGCAACCAATGTTGAGAGCGCTTTCTCCACGGTTTTGACTGAGATCTTCAACA 650
Query 542 TTGTCAACAAGAAAAGTCTTGTTGCTG-GTGAAGGA-GAAG-GTAATGGTGATCCTGCAT 598
|||| |||||||||||||| | ||| | ||||| || ||| | |||||| |||| | |
Sbjct 651 TTGTGAACAAGAAAAGTCTGGCTGC-GAGTGAA-GATCAAGAG-AATGGTAATCCCGGGT 707
Query 599 CGCTTGCTGGTAAGAAGATTGATATTGCTCCAGGTCCTGGTCAGGTGATTCCAA-CGAAG 657
||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| | |||
Sbjct 708 CGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGTCAAGTGATACCAAAC-AAG 766
Query 658 AATAG-ATTGTGTTGTAACACTTAG 681
| || || |||||||||| |||||
Sbjct 767 AGTAACAT-GTGTTGTAACTCTTAG 790
> AT1G01200.1 | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase
homolog A3 | chr1:86515-88213 REVERSE LENGTH=982
Length=982
Score = 122 bits (66), Expect = 3e-27
Identities = 205/269 (76%), Gaps = 22/269 (8%)
Strand=Plus/Plus
Query 37 AAGATTGACTACGTCTTCAAGCTGGTGTTGATCGGAGACTCTGGTGTTGGCAAATCGCAG 96
||||| || ||||| |||||| ||||| | || ||||| |||| ||| || ||| |||||
Sbjct 138 AAGATCGATTACGTGTTCAAGGTGGTGGTCATTGGAGATTCTGCTGTCGGGAAAACGCAG 197
Query 97 ATACTGTCTCG--GTACGCGAGAAACGAGTTCAGCTTA-GATTCCAAAGCTACCATCGGC 153
| || || || ||| | | ||||||||| | ||| ||||| ||| | ||||| ||
Sbjct 198 CTCCTCTCACGTTTTACAC-A-CAACGAGTTCTG-TTATGATTCAAAATCAACCATTGGT 254
Query 154 GTCGAATTTCAAACTC-GA--A-CACTTGTTATC-GACCATAAGAGT-GTCAAAGCTCAG 207
||||| ||||| || | || | ||| | | || | | || | | ||||||||||||
Sbjct 255 GTCGAGTTTCAGACACGGACCATCAC-T-CT-TCGGGGC--AA-ACTCGTCAAAGCTCAG 308
Query 208 ATCTGGGACACCGCCGGCCAAGA-ACGGTATAGAGCGGTGACGAGTGCGTATTACAGAGG 266
||||||||||||||||| ||||| | | || ||||||||||| || || || ||||||||
Sbjct 309 ATCTGGGACACCGCCGGTCAAGAGA-GATACAGAGCGGTGACTAGCGCCTACTACAGAGG 367
Query 267 AGCGGTTGGG-GCGATGCTGGTTTACGAC 294
||| || || |||||| |||||||||||
Sbjct 368 TGCG-TTAGGTGCGATGGTGGTTTACGAC 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5