BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325603
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10630.2 | Symbols: | Translation elongation factor EF1A/in... 3192 0.0
AT5G10625.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 510 2e-143
> AT5G10630.2 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr5:3360117-3364619
FORWARD LENGTH=2362
Length=2362
Score = 3192 bits (1728), Expect = 0.0
Identities = 1949/2050 (95%), Gaps = 38/2050 (2%)
Strand=Plus/Plus
Query 322 AAACTAACGATGCCTCGTAAAGGATTATCCAATTTCgatgattatgatgatggttttgat 381
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AAACAAACGATGCCTCGTAAAGGATTATCCAATTTCGATGATTATGATGATGGTTTTGAT 201
Query 382 gatgatgacgatgcttatgattatgactatgatgTAGATATTGAAGAACACGAAGAAGAG 441
|||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 202 GATGATGACGATGCTTTTGATTATGACTATGATGTTGATATAGATGAACATGAAGAAGAA 261
Query 442 GAAGCTGCTGAACCAAAGGAAGAAATTGCT--AA-GCAAGGGCTTTGGCGATGTGCTATC 498
| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 262 GCTGCTGCTGAACCAAAGGAAGAAATTGCTAAAACGCAAGGGCTTTGGCGATGTGCTATC 321
Query 499 TGTACATATGACAATGATGAGAGTATGTTTGTGTGTGATATCTGCGGCGTTCTTCGTCAT 558
|||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 322 TGTACATATGACAATGTTGAGACTATGTTTGTGTGTGATATCTGCGGTGTTCTTCGTCAT 381
Query 559 CCTGTAGCCGGAAATCAAAGTATCAACAAGACTACAATTGGGTCTTTGCAATTGTGCTGT 618
||||| ||||||||||||||||| | | | | || | || | | |
Sbjct 382 CCTGTCGCCGGAAATCAAAGTAT---C-A-A-T--AA----------G-AA---TACAG- 418
Query 619 TCACCTTTCAAGTTTGATGCTCCATCGCCAGATGATTTAGTCTCCAATGGACTAACATCC 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 -CACCTTTCAAGTTTGATGCTCCATCGCCAGATGATTTAGTCTCCAATGGACTAACATCC 477
Query 679 TCAAAAACTGGTCCAAAAGGCTCAGGTGATGCTAGTATGAGACAGAAGGAGAAGCAAGAT 738
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TCAAAAACTGGTCCAAAAGGCTCAGGTGATGCTAGCATGAGACAGAAGGAGAAGCAAGAT 537
Query 739 AGCGCAGAACAGAAACCTTTTAAA-AAAGGAGGAGATAATTCCGAAACAAGCTCCCGAGG 797
|||| |||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 538 AGCGTAGAACAGAAACC-TTTAAAGAAAGGAGGAGATAGTTCAGAAACAAGCTCCCGAGG 596
Query 798 TAGACATGATAAACTTGATAATAGTGTTTCAAAGGGTGGTGCTGGTGGCATAAAATCGGG 857
||||||||||||||||| | || | ||||| |||||||| ||||||||||| ||
Sbjct 597 TAGACATGATAAACTTG-----A-TG-AT--AAGGGCGGTGCTGGCGGCATAAAATCAGG 647
Query 858 AAAAAGTTTGCCAAAAGCAAAAGCAGATATGTCTAATGAGACAAGTTCTTCCTCCAAATA 917
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 648 CAAAAGTTTGCCAAAAGCAAAAGCAGATATGTCTAATGAGACAAGTTCGTCCTCTAAATA 707
Query 918 TTTGGAGACGTCAGAGAGTCTTACCGGTACTATGAACAAGATGTCTTTGATTGGGGAAAC 977
| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 TATGGAGACGTCGGAGAGTCTTACTGGTACTATGAACAAGATGTCTTTGATTGGGGAAAC 767
Query 978 AGAAAACTCCAGCGATATTAAAATTAGAGGACCAAGATCACAATCTAAGCATAAGCCAGA 1037
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 768 AGAAAACTCTAGCGATATTAAAATTAGAGGACCAAAATCACAATCTAAGCATAAGCCAGA 827
Query 1038 GGAGTGGATGCTTCTTGATAAAGAATCAGATGCACTAAGCCAGCTTAATCTTGCCATCGT 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GGAGTGGATGCTTCTTGATAAAGAATCAGATGCACTAAGCCAGCTTAATCTTGCCATCGT 887
Query 1098 GGGGCATGTTGATTCCGGTAAGTCAACACTTTCGGGTAGATTATTGCATCTATTGGGAAG 1157
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 888 GGGGCATGTTGATTCCGGTAAGTCTACACTTTCGGGTAGATTATTGCATCTTTTGGGAAG 947
Query 1158 AATTTCGCAGAAGCAAATGCACAAGTATGAGAAAGAAGCAAAGTTGCAGGGCAAAGGGTC 1217
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AATATCGCAGAAGCAAATGCACAAGTATGAGAAAGAAGCAAAGTTGCAGGGCAAAGGGTC 1007
Query 1218 CTTTGCATATGCCTGGGCATTGGATGAGAGTGCTGAAGAGAGAGAACGAGGAATAACAAT 1277
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1008 CTTTGCATATGCCTGGGCATTGGATGAGAGTGCTGAAGAGAGGGAACGAGGAATAACAAT 1067
Query 1278 GACTGTGGCTGTTGCTTATTTCAACTCCAAAAGACATCATGTTGTTTTGCTCGACTCTCC 1337
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1068 GACTGTGGCTGTTGCTTATTTCAATTCCAAAAGACATCATGTTGTTTTGCTCGACTCTCC 1127
Query 1338 TGGACACAAAGATTTTGTTCCAAACATGATAGCAGGAGCAACACAAGCAGATGCTGCGAT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGGACACAAAGATTTTGTTCCAAACATGATAGCAGGAGCAACACAAGCAGATGCTGCGAT 1187
Query 1398 TCTTGTCATAGATGCATCTGTCGGTGCTTTTGAAGCTGGTTTTGATAATTTGAAAGGCCA 1457
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1188 TCTTGTCATAGATGCATCTGTTGGTGCTTTTGAAGCTGGTTTTGATAATTTGAAAGGGCA 1247
Query 1458 GACAAGGGAGCATGCACGGGTTCTGAGAGGTTTTGGCGTGGAGCAAGTCATAGTTGCAGT 1517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1248 GACAAGGGAGCATGCACGGGTTCTGAGAGGTTTTGGCGTGGAGCAAGTCATAGTTGCAAT 1307
Query 1518 CAACAAAATGGATATTGTTGGCTACTCAAAGGAAAGATTTGATTTGATTAAGCAGCATGT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1308 CAACAAAATGGATATTGTTGGCTACTCAAAGGAAAGATTTGATTTGATTAAGCAGCACGT 1367
Query 1578 TGGATCTTTTTTGCAATCCTGTCGTTTTAAGGATTCTTCTCTGACATGGATTCCATTAAG 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGGATCTTTTTTGCAATCCTGTCGTTTTAAGGATTCTTCTCTGACATGGATTCCATTAAG 1427
Query 1638 TGCCATGGAAAACCAAAACTTGGTGGTAGCTCCCTCTGATAATCGCCTATCCTCATGGTA 1697
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1428 TGCCATGGAAAACCAAAACTTGGTGGCAGCTCCCTCTGATAACCGCCTATCCTCATGGTA 1487
Query 1698 TCAAGGTCCATGTTTATTGGATGCCGTTGACTCTGTCAAGTCTCCTGATAGAGACGTCTC 1757
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1488 TCAAGGTCCATGTTTATTGGATGCCGTCGACTCTGTCAAGTCTCCTGATAGAGACGTCTC 1547
Query 1758 AAAGCCTCTACTCATGCCTATATGTGATGCTGTAAGATCAACTTCGCAAGGGCAGGTATC 1817
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1548 AAAGCCTCTACTCATGCCTATATGTGACGCTGTAAGATCAACTTCGCAAGGGCAGGTATC 1607
Query 1818 TGCATGTGGCAAACTTGAAGCTGGAGCTGTTCGGCCAGGATCTAAGATAATGATTATGCC 1877
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 1608 TGCATGTGGCAAACTTGAAGCTGGAGCTGTCCGGCCAGGATCTAAGGTAATGGTTATGCC 1667
Query 1878 ATCGGGAGATCAAGGAACCGTGCGGTCTCTGGAGCGTGACTCTCAGGCTTGCACCATTGC 1937
||| ||||||||||||||| | || || || |||||||||||||||||||||||||||||
Sbjct 1668 ATCAGGAGATCAAGGAACCATACGATCACTAGAGCGTGACTCTCAGGCTTGCACCATTGC 1727
Query 1938 AAGAGCTGGAGATAACGTAGCGATAGCTTTGCAAGGGATCGATGCAAATCAAGTAATGGC 1997
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1728 AAGAGCTGGAGATAACGTAGCGTTAGCGTTGCAAGGGATCGATGCAAATCAAGTAATGGC 1787
Query 1998 AGGAGATGTATTGTGCCATCCTGATTTCCCTGTATCAGTAGCAACTCATTTGGAATTGAT 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 AGGAGATGTATTGTGCCATCCTGATTTCCCTGTATCAGTAGCAACTCATTTGGAATTGAT 1847
Query 2058 GGTGCTCGTCTTGGAAGGCGCAACACCGATCTTGCTTGGTTCTCAGTTGGAGTTTCATGT 2117
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1848 GGTGCTCGTCTTGGAAGGCGCAACACCGATCTTGCTCGGTTCTCAGTTGGAGTTTCATGT 1907
Query 2118 GCATCATGCTAAGGAAGCAGCAACAGTTGTGAAACTTGTGGCAATGCTTGATCCCAAAAC 2177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 GCATCATGCAAAGGAAGCAGCAACAGTTGTGAAACTTGTGGCAATGCTTGATCCCAAAAC 1967
Query 2178 AGGGCAGCCAACAAAGAAGTCTCCTCGTTGTCTAACTGCGAAACAGAGTGCAATGCTTGA 2237
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1968 AGGGCAGCCAACAAAGAAGTCTCCTCGTTGTCTAACTGCTAAACAGAGCGCAATGCTTGA 2027
Query 2238 GGTTAGTCTCCAAAATCCAGTTTGTGTGGAGACATTTTCTGAAAGTAGAGCTCTTGGAAG 2297
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2028 GGTTAGTCTCCAAAATCCAGTATGTGTGGAGACATTTTCTGAGAGTAGAGCTCTTGGAAG 2087
Query 2298 AGTGTTCCTTAGATCATCAGGAAGAACTGTTGCTATGGGCAAAGTTACTCGGATTATCGA 2357
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2088 AGTGTTCCTTAGATCATCGGGAAGAACTGTTGCTATGGGCAAAGTTACTCGGATTATCCA 2147
Query 2358 AGACTCATAA 2367
||||||||||
Sbjct 2148 AGACTCATAA 2157
> AT5G10625.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:3358787-3359781 FORWARD LENGTH=995
Length=995
Score = 510 bits (276), Expect = 2e-143
Identities = 306/321 (95%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGGCGTTTGGGTGTTCAACAACGGAGTGATACGTCTAGTGGAGAACCCGAACCAG 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 148 ATGTCAGGAGTTTGGGTGTTCAATAACGGAGTGATACGTCTAGTGGAGAACCCGAACCAG 207
Query 61 TCCGAAGGAGTAGCCACACAGACAAACGGCCGGAGATATGTCTTGGTTTACTTGCCGACC 120
|||| ||||| |||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 208 TCCGGTGGAGTTTCCACACAGTCGCACGGCCGGAGAAATGTCTTGGTTTACTTGCCGACC 267
Query 121 GGTGAAGCCGTCTCTTCTTACTCGTCGCTTGAACAAATCTTAAGGAGCCTCGGGTGGGAA 180
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 268 GGTGAAGCCGTCTCATCTTACTCGTCGCTCGAACAAATCCTAAGGAGCCTCGGGTGGGAA 327
Query 181 AGATACTTCAGTGGAGACTCCGATCTCATCCAGTACCATAAACGATCCTCCATCGACCTC 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 328 AGATACTTCAGTGGAGACTCCGATCTCATCCAGTACCACAAACGCTCCTCCATCGACCTC 387
Query 241 ATCTCCTTACCAAGAGACTTCTCCAAGTTCAACTCCGTTTACATGTACGACATCGTTGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 ATCTCCTTACCAAGAGACTTCTCCAAGTTCAACTCCGTTTACATGTACGACATCGTTGTC 447
Query 301 AAGAACCCTAATTCCTTCCAC 321
|||||||||||||||||||||
Sbjct 448 AAGAACCCTAATTCCTTCCAC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5