BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325616

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10780.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   854    0.0  


> AT5G10780.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 
Uncharacterised conserved protein UCP017207, transmembrane 
protein 85 (InterPro:IPR016687), Protein of unknown function 
DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 
proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa 
- 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes 
- 83 (source: NCBI BLink). | chr5:3408279-3410070 FORWARD 
LENGTH=993
Length=993

 Score =  854 bits (462),  Expect = 0.0
 Identities = 493/508 (97%), Gaps = 1/508 (0%)
 Strand=Plus/Plus

Query  1    ATGGACAAAGGCAAAGCAGTGATGGGTACTGGTCGGAGATGGGCCGTCGAATTCTCCGAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  144  ATGGACAAAGGCAAAGCAGTGATGGGTACTGGTCGGAGATGGGCCGTCGAATTCTCCGAT  203

Query  61   CAATCTACTGTTCCATCTTCCCGTGACATCCTCGATCCACCTGGCTTCTCTCGTGCTTCT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  204  CAATCTACTGTTCCATCTTCCCGTGACATCCTCGATCCACCTGGCTTCTCTCGTGCCTCT  263

Query  121  CAGGAACAGGATGATTCAGCAAACAGCCGCCAAAAGAAAGACGCCGAAGCAACTTGGAAA  180
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  264  CAGGAACAGGATGATTCAGCAAACAGCCGCCAAAAGAAAGACGCTGAAGCTACTTGGAAA  323

Query  181  CTTCAGAAAGCGTGGGAAGTAGCGCAATCTCCGTTTAAGAATTTGATGATGATGGGTTTC  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  324  CTTCAGAAAGCGTGGGAAGTAGCGCAATCTCCATTTAAGAATTTGATGATGATGGGTTTC  383

Query  241  ATGATGTGGATGGCTGGAAACACTGTGCATCTTTTTAGTATTGGTATTACTTTCTCTGCT  300
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  384  ATGATGTGGATGGCTGGAAACACAGTTCATCTTTTTAGTATTGGTATTACTTTCTCTGCT  443

Query  301  CTTTGGCAGCCTATCAGTGCTCTCCAGAGTGTTGGAAAGATTTTTGAGCCATTCAAGGAT  360
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  444  CTTTGGCAGCCTATCAGTGCTCTTCAGAGTGTTGGAAAGATTTTTGAGCCATTCAAGGAT  503

Query  361  AACAAAGTGGAACTACTGATGCCGAAATTAGTGTTTCTTGCCCTAAACCTTGGAGGGTTA  420
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  504  AACAAAGTGGAACTACTTATGCCGAAATTAGTGTTCCTTGCCCTAAACCTTGGAGGGCTA  563

Query  421  GCTTTGGGTGTCTGGAAGCTTAACACTTTGGGGCTTCTTCCAACACATGCATCGGACTGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  564  GCTTTGGGTGTCTGGAAGCTTAACACTTTGGGGCTTCTTCCAACACATGCATCAGATTGG  623

Query  481  GTTTCATCTCTACCTCCTCCTCAGGTTG  508
            |||||||||||||| ||||||||| |||
Sbjct  624  GTTTCATCTCTACCCCCTCCTCAG-TTG  650



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5