BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325618
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containin... 1668 0.0
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containin... 887 0.0
> AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412654-3418382 REVERSE LENGTH=3088
Length=3088
Score = 1668 bits (903), Expect = 0.0
Identities = 1088/1176 (93%), Gaps = 18/1176 (2%)
Strand=Plus/Plus
Query 1600 GAACGAGTACTCAAAGTACTGCAGGTATGGGCAGATTGGTTTCTTTTTTCAGATGCATAT 1659
||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1672 GAACGAGTACTAAAAGTACTGCAGGTATGGGCAGACTGGTTTCTCTTCTCAGATGCATAT 1731
Query 1660 ATAAATGGGCTACGGGCTACGTTTCTCAGGTCGGGAAA-TTCTGGTGTTACCTCGTTTCA 1718
||||||||||||||||| || |||||| |||| |||| || ||||||||||||||||||
Sbjct 1732 ATAAATGGGCTACGGGCCACATTTCTCCGGTCAAGAAACTT-TGGTGTTACCTCGTTTCA 1790
Query 1719 TTCTATCTGTGGTGATGCGCCTGGTATAGAGAAGAAAGGTCTCATAGGAAATATGAACAA 1778
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |
Sbjct 1791 TTCTATCTGTGGTGATGCGCCTGATATAGAGAAGAAAGGTCTGATAGGCAATATGAACGA 1850
Query 1779 TGCTGATAAGTTTAATCAAGACACTGCACTGGCAATGGGCCAAGGAGATGCAAGGCAAGA 1838
|||||||||| | ||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1851 TGCTGATAAGATCAATCAAGACGCTGCACTGGCAATGGGTGAAGGAGCTGCAAGGCAAGA 1910
Query 1839 GCTGATGAATCTACCAATTTCTGAGCTTGAGAGACGATGCAGACACAACGGTCTGTCACT 1898
||| ||||||| ||||||||| |||||||| || || ||||||||||||||||| |||||
Sbjct 1911 GCTAATGAATCGACCAATTTCAGAGCTTGAAAGGCGCTGCAGACACAACGGTCTATCACT 1970
Query 1899 TGTAGGGGGTATAGAGATGATGGTTGCTCGGCTGCTAAGCCTGGAAGATGCAGAGAAACA 1958
| ||||||||| |||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct 1971 TTTAGGGGGTAGAGAGATGATGGTTGCTCGGCTGGTATGTCTGAAAGATGCAGAGAAACA 2030
Query 1959 ACGTGGCTATGAAGTAGTAGATGAAAATGCAAAGTATCGACAGGGACATTCAACTTGGGA 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ACGTGGCTATGAAGTAGTAGATGAAAATGCAAAGTATCGACAGGGACATTCAACTTGGGA 2090
Query 2019 AGAAGTTAACATTGAGCCTAAGCAGATGAAAACCAGCTATTATAAAGTTGAAACTAAAGA 2078
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||
Sbjct 2091 AGAAGTTAACATTGAGCCTAAGCGGATGAAAACCAGCTATGATAAAGTGGAAACTGAAGA 2150
Query 2079 GCCTGTGAATCTGGCCTCGAGAATTCCAATCCCCCAGCCGGAGCTAAAAGCCTTTGTGAA 2138
||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||
Sbjct 2151 GCCTGTGGATCTGGCCTCGACAATACCAATCCCACAGCCGGAGCTAAAAGCCTTTGT-AA 2209
Query 2139 A-AAGGAGAAAAATGACCTCATAT-TGCCAACTTCCAGATGGGC----G-AGA-GA-G-- 2187
| |||||||||| ||||||||| | | ||||||||||||||||| | ||| || |
Sbjct 2210 AGAAGGAGAAAATTGACCTCAT-TCTACCAACTTCCAGATGGGCGAGAGAAGATGATGAA 2268
Query 2188 ---GATGATGAACaaaaaaaGAGCTACTCCTCTGGTAGTGACAATGCTGGCGTATTAACT 2244
||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||
Sbjct 2269 ACTGATGATGAACAAAAAAAGAGCTACTCCTCTGGTAGCGACAATGCTGGTGGAATAACT 2328
Query 2245 TTCAAGACTGATGAAGAGGATCTCAAGGCTGATCCAAGTATTCGTGTCCAGCCTGAAAAT 2304
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2329 TTCAAGACCGATGAAGAGGATCTCAAAGCTGATCCAAGTGTTCGTGTCCAGCCTGAAAAT 2388
Query 2305 GAAATCGACGAGGAGCAAAGACAAAAGCTTAAACGCATAGAGGTTGCTTTGATAGAGTAT 2364
|||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 2389 GAAATCGACGTGGAGCAAAGACAAAAGCTTAGACACATAGAGATTGCTTTGATAGAGTAT 2448
Query 2365 CGAGAATCTCTTGAGGAACAGGGGATGAAAAACTCTGAGGAGATAGAAAGAAAAGTTACG 2424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2449 CGAGAATCTCTTGAGGAACAAGGGATGAAAAACTCTGAGGAGATAGAAAGAAAAGTTGCT 2508
Query 2425 ATCCACCGAAAGAGGCTTGAAGCTGATGTCTTAAAAGGAAATCAGAGAGTATTGCCAGAG 2484
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 2509 ATCCACCGAAAGAGGCTTGAAGCTGATGGCTTATCAGGAAATCAGAGAGTATTGCCCGAG 2568
Query 2485 AAAAGGGAGAAGCGTGAAGATTCTAGAGATTCATCTAGAAAGAGATACCGAAGTGAGAGC 2544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2569 AAAAGGGAGAAGCGTGAAGATTCTAGAGATTCATCTAGAAAGAGAAACCGAAGTGAGAGC 2628
Query 2545 CAGAATCGAAGCCAGAGGCCACCACAAAAATTATTAACCAGAGAAAGGGTGAGAGATCAT 2604
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2629 CAGAATCGAAGCCAGAGTCCACCACAGAAATCATTAACCAGAGAAAGGGTGAGAGATCAT 2688
Query 2605 GACTTGGACAAAGACAGACACAGAGACAGAGATAGGCAACAACATGATTTGGACAAGGAC 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2689 GACTTGGACAAAGACAGACACAGAGACAGAGATAGGCAACAACATGATTTGGACAAGGAC 2748
Query 2665 CGAGAACGAAGAGCAAAGAGCTCAAGTCATGAGAGAGACGATCATGATATAAGCAGAGAG 2724
||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2749 CGAAAACGAAGAGCAAAGAGCTCAAGTCGCGAGAGAGACGATCATGATAGAAGCAGAGAG 2808
Query 2725 CGAGACAGAGATTGGCGTAGACGAGGCATGAGATGA 2760
||||| ||||||||||| ||||||||||||||||||
Sbjct 2809 CGAGATAGAGATTGGCGCAGACGAGGCATGAGATGA 2844
Score = 1378 bits (746), Expect = 0.0
Identities = 818/853 (96%), Gaps = 4/853 (0%)
Strand=Plus/Plus
Query 696 ACAAGCACTACCAGCTCCTCCTCCTGGGCATATGGCAATCCGGAGTAAGGAGGGCTGCAA 755
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ACAAGCACTACCAGCTCCACCTCCTGGGCATATGGCAATCCGGAGTAAGGAGGGCTGCAA 878
Query 756 TTTAATTTTTTCTGGTACATCGGGTCCACCAAT-AACTTCCGTTCCAAATCAAAATTCCG 814
|||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 879 TTTAATTTTTTCTGTTACATCGGGTCCACCAATGAA-TTCCGTTCCAAATCAAAATTCTG 937
Query 815 AGCTGGTTCTTACCCCAAATGTTCCGGATATCACTGTTGTTTCTCCTGAGGACGAGCACC 874
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 938 AGCTGGTTCTTACCCCAAATGTTCCGGATATCACTGTTATTTCTCCTGAGGACGAGCACC 997
Query 875 TCAAACATATTATTGATACAATGGCCCTTAATGTACTGGATGGTGGCTGCGCTTTTGAAC 934
||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 998 TCAAACAGATTATAGATACAATGGCCCTTAATGTACTGGACGGTGGATGCGCTTTTGAAC 1057
Query 935 AAGCAATTATGGAGAGGGGGCGTGGTAATCCACTTTTTAACTTCTTGTTTGAGCTGGGCT 994
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AAGCTATTATGGAGAGGGGGCGTGGTAATCCACTTTTTAACTTCTTGTTTGAGCTGGGCT 1117
Query 995 CGAAGGAGCATACCTACTATGTCTGGAGGCTCTATTCCTTTGCTCAGGGTGATACCCTTC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 CGAAGGAGCATACCTACTATGTCTGGAGGCTCTATTCCTTTGCTCAGGGTGATACCCTTC 1177
Query 1055 AAAGATGGAGAACAGAGCCGTACATCATGATAGCTGGAAGTGGAAGATGGATTCCCCCAC 1114
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1178 AAAGGTGGAGAACAGAGCCGTATATCATGATAGCTGGAAGTGGAAGATGGATTCCGCCAC 1237
Query 1115 CTCTGCCTGCAACTAGAAGTCCAGAGCATGGAAAAGAGTCTACATGCACATACGCAGCAG 1174
| |||||||||||||| || |||||||||||||||||||||| | |||||||||||||||
Sbjct 1238 CGCTGCCTGCAACTAGGAGCCCAGAGCATGGAAAAGAGTCTAGAGGCACATACGCAGCAG 1297
Query 1175 GGAAAAGCAGGAGCATGGAAGCTGAGCAAACTCTAACCGATTCCCAAAGGGATGAATTTG 1234
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GGAAAAGCAGGTGCACGGAAGCTGAGCAAACTCTAACCGATTCCCAAAGGGATGAATTTG 1357
Query 1235 AGAACATGTTGCGCGCTCTAACTTTAGAAAGGAGTCAAATCAAAGAAGCTATGGGGTTTG 1294
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1358 AGGACATGTTGCGCGCTCTAACTTTAGAAAGGAGTCAAATCAGAGAAGCTATGGGGTTTG 1417
Query 1295 CTTTGGATAACGCAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACAGAGTCATTGACCC 1354
|||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1418 CTTTGGATAACGCAGAGGCAGCTGGTGAGGTTGTTGAAGTTCTGACTGAGTCGTTGACCC 1477
Query 1355 TGAAAGAGACATCGATTCCCACTAAAGTTGCAAGACTCATGCTTGTGTCTGACATTCTTC 1414
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1478 TGAAAGAGACATCAATTCCCACTAAAGTTGCAAGACTCATGCTTGTGTCTGACATTATTC 1537
Query 1415 ATAATAGCAGCGCTCGTGTTAAAAATGCCTCTGCATACCGGACAAAATTCGAAGCAACAT 1474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 ATAATAGCAGCGCTCGGGTTAAAAATGCCTCTGCATACCGGACAAAATTCGAAGCAACAT 1597
Query 1475 TACCCGATATAATGGAAAGCTTCAACGATCTATACCGCAGCGTA-ACTGGCAGGATTACC 1533
|||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||
Sbjct 1598 TACCTGATATAATGGAAAGCTTCAACGATCTATACCACAGCGTACA-TGGAAGGATTACC 1656
Query 1534 GCGGAGGCTCTTA 1546
|||||||||||||
Sbjct 1657 GCGGAGGCTCTTA 1669
Score = 736 bits (398), Expect = 0.0
Identities = 464/495 (94%), Gaps = 8/495 (2%)
Strand=Plus/Plus
Query 187 GGTATGTTCCCTCCTTTCTCCCCCCACCATTGGCATCtaagggtaaagaaccagagaat- 245
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 266 GGTATGTTCCCTCCTTTCTCCCCCCACCATTGGCATCTAAGGGTAAAGGACCAGAGAATA 325
Query 246 a-agggaagaagagagatcaaaggaga-gagaaaaggtaaagaCTCGAAACATAGATCAT 303
| ||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 326 AGAGGGATGAAGAGAGATCAAAGGAGATG-GAAAAGGGAAAGACTCGAAACATAGATCAT 384
Query 304 TTTATGGAGGATTTGAAACGTGAACAAGAAATGAGAGAAAGGCGAAACAAGGATCACGAG 363
||| ||||||| | || |||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 385 TTTGTGGAGGAGCTCAAGCGTGAACAAGAAATAAGAGAAAGGCGAAACCAGGATCGCGAG 444
Query 364 AATTCCCGTGACCATAATAGTGATAACACGTCATCTAGCCGCTTTGATGAGCTACCTGAT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATTCCCGTGACCATAATAGTGATAACACGTCATCTAGCCGCTTTGATGAGCTACCTGAT 504
Query 424 GATTTTGATCCCAGTGGAAGGTTAGGGTCATTGGAAGATGGTGACCCACAAACTACAAAT 483
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 505 TATTTTGATCCCAGTGGAAGGTTAGGGTCATTGGACGATGGTGACCCACAAACTACAAAT 564
Query 484 CTATATGTTGGGAATCTTTCAGCTAAGGTTGATGAAAATTTTATTCTGCGGACTTTTGGA 543
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 565 CTATATGTTGTGAATCTTTCATCTAAGGTTGATGAAAATTTTCTTCTGCGGACTTTTGGA 624
Query 544 AGATTTGGGCGAATAGCTAGTGTTAAAATTATGTGGCCAATAACGGAGGAAGAGAAAAGG 603
|||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 625 AGATTTGGGCCAATAGCTAGTGTTAAAATTATGTGGCCAAGAACAGAGGAGGAGAAAAGG 684
Query 604 CGAGAAAGACATTGGGGCTTTGTTGCTTTCATGAATAGAGTCGACGG-GCAAGCTGCAAA 662
|||||||| ||||| ||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 685 CGAGAAAGGCATTGTGGCTTTGTTGCTTTCATGAATAGAGCCGACGGAG-AAGCTGCAAA 743
Query 663 AGATGAAA-TGCAAG 676
||| |||| ||||||
Sbjct 744 AGA-GAAAATGCAAG 757
> AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634074-8640217 REVERSE LENGTH=3219
Length=3219
Score = 887 bits (480), Expect = 0.0
Identities = 744/869 (86%), Gaps = 27/869 (3%)
Strand=Plus/Plus
Query 696 ACAAGCACTACCAGCTCCTCCTCCTGGGCATATGGCAATCCGGAGTAAGGAGGGCTGCAA 755
||||||| |||| ||||| || ||||| |||||||| || ||||||||||||||||||||
Sbjct 1028 ACAAGCATTACCCGCTCCACCACCTGGACATATGGCTATTCGGAGTAAGGAGGGCTGCAA 1087
Query 756 TTTAATTTTTTCTGGTAC-ATCGGGTCCACC---AATAACTTCCGTTCCAAATCAAAATT 811
|| ||||||||||| | | |||||||||| ||||||||| ||||||||||||||||
Sbjct 1088 CTTGGTTTTTTCTGGT-CAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATT 1146
Query 812 CCGAGCTGGTTCTTACCCCAAATGTTCCGGATATCACTGTTGTTTCTCCTGAGGACGAGC 871
| ||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1147 CTGAGCTGGTTCTTACCCCTAATGTTCCGGATATCACTGTTGTTACCCCTGAGGACGAGC 1206
Query 872 ACCTCAAACATATTATTGATACAATGGCCCT-TAATGTACTGGATGGTGGCTGCGCTTTT 930
|||||| |||| | ||||||||| |||| || | |||| |||||||||| || ||||||
Sbjct 1207 ACCTCAGACATGTCATTGATACATTGGCACTCT-ATGTTCTGGATGGTGAATGTGCTTTT 1265
Query 931 GAACAAGCAATTATGGAGAGGGGGCGTGGTAATCCACTTTTTAACTTCT-TGTTTGAGCT 989
|||||||| || ||||||||||| ||||| |||||||| || || || | |||| |||||
Sbjct 1266 GAACAAGCTATCATGGAGAGGGGCCGTGGGAATCCACTGTTCAAGTT-TATGTTCGAGCT 1324
Query 990 GGGCTCGAAGGAGCATACCTACTATGTCTGGAGGCTCTATTCCTTTGCTCAGGGTGATAC 1049
||||| ||||||||||| ||||| |||||||| || |||||||| ||||||||||||||
Sbjct 1325 TGGCTCAAAGGAGCATACTTACTACGTCTGGAGACTATATTCCTTCGCTCAGGGTGATAC 1384
Query 1050 CCTTCAAAGATGGAGAACAGAGCCGTACATCATGATAGCTGGAAGTGGAAGATGGATTCC 1109
|||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 1385 ACTTCAAAGGTGGAGAACAGAGCCGTATATCATGATAACTGGTAGTGGAAGATGGATACC 1444
Query 1110 CCCACCTCTGCCTGCAACTAGAAGTCCA-GAGCATGGAAAAGAGTCT-ACATGCACATAC 1167
||||| ||||||| |||||| | ||| ||||| | |||||||||| || |||| ||
Sbjct 1445 GCCACCACTGCCTGTAACTAGGA-CCCAGGAGCACGAAAAAGAGTCTGCCA-GCACTTAT 1502
Query 1168 GCAGCAGGGAA-AAGCAGGAGCAT--GGAAGCTGAGCA-AACTCTAACCGATTCC-CAAA 1222
|| || ||||| || || || | | ||||| |||| | ||||| ||||| ||| || |
Sbjct 1503 GCGGC-GGGAAGAACCA-GA-CGTGCGGAAGTTGAG-AGGACTCTGACCGA-TCCTCAGA 1557
Query 1223 GGGATGAATTTGAGAACATGTTGCGCGCTCTAACTTTAGAAAGGAGTCAAATCAAAGAAG 1282
||||||| || ||| |||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 1558 GGGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAG 1617
Query 1283 CTATGGGGTTT-GCTTTGGATAACGCAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACA 1341
|||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1618 CTAT-GGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAGAGGTTGTTGAAGTTTTGACG 1676
Query 1342 GAGTCATTGACCCTGAAAGAGACATCGATTCCCACTAAAGTTGCAAGACTCATGCTTGTG 1401
||||| |||| || ||||||||||| ||||| || |||||||| |||||||||||||||
Sbjct 1677 GAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAGTTGCTAGACTCATGCTTGTG 1736
Query 1402 TCTGACATTCTTCATAATAGCAGCGCTCGTGTTAAAAATGCCTCTGCATACCGGACAAAA 1461
||||| ||||||||||||||||| || |||||||||||||| ||||||||||| || |||
Sbjct 1737 TCTGATATTCTTCATAATAGCAGTGCACGTGTTAAAAATGCATCTGCATACCGAACCAAA 1796
Query 1462 TTCGAAGCAACAT-TACCCGATATAATGGAAAGCTTCAACGATCTATACCGCAGCGTAAC 1520
||||||||||| | |||| |||||||||||||||||||| ||||| ||||| ||| ||||
Sbjct 1797 TTCGAAGCAAC-TCTACCTGATATAATGGAAAGCTTCAATGATCTGTACCGAAGCATAAC 1855
Query 1521 TGGCAGGATTACCGCGGAGGCTCTTAAAG 1549
||| || ||||| || |||||||| ||||
Sbjct 1856 TGGAAGAATTACTGCTGAGGCTCTAAAAG 1884
Score = 448 bits (242), Expect = 2e-124
Identities = 413/494 (84%), Gaps = 18/494 (4%)
Strand=Plus/Plus
Query 187 GGTATGTTCCCTCCTTT-CTCCCCCCACCATTGGCATCtaagggtaaagaaccagagaa- 244
|||||||||||| |||| || || |||||| ||||||| |||||||||||||| |||||
Sbjct 487 GGTATGTTCCCT-CTTTCCTTCCACCACCACTGGCATCCAAGGGTAAAGAACCGGAGAAG 545
Query 245 ta-agggaagaagagagatcaaaggagagagaaaaggtaaagaCTCGAAACATAGATCAT 303
| ||||| || ||||| | | ||| |||||||||| |||||||||||| |||||| ||
Sbjct 546 AAGAGGGAGGAGGAGAGGCCTAGGGAAAGAGAAAAGGGAAAGACTCGAAATATAGATAAT 605
Query 304 TTTATGGAGGATTTGAAACGTGAACAAGAAATGAGAGAAAGGCGAAACAAGGATCACGAG 363
|| |||||||| ||||||||||||||||||||||||||||| |||||| || | |
Sbjct 606 TTCATGGAGGAGTTGAAACGTGAACAAGAAATGAGAGAAAGACGAAAC------CA-G-G 657
Query 364 AATTCCCGTGACCATAATAGTGATAACACGTCATCTAGCCGCTTTGATGAGCTACCTGAT 423
| | ||||||| | | | |||| | || |||||||||||||||||||||||||||||
Sbjct 658 -A-T--CGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCTTTGATGAGCTACCTGAT 713
Query 424 GATTTTGATCCCAGTGGAAGGTTAGGGTCATTGGAAGATGGTGACCCACAAACTACAAAT 483
||||||||||||||||| ||| ||| || || || |||||||||||||||||||| |||
Sbjct 714 GATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTGACCCACAAACTACGAAT 773
Query 484 CTATATGTTGGGAATCTTTCAGCTAAGGTTGATGAAAATTTTATTCTGCGGACTTTTGGA 543
|| |||||||||||||| || | ||||||||||| ||||| ||||||| ||||| |||
Sbjct 774 CTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCCTTCTGCGCACTTTCGGA 833
Query 544 AGATTTGGGCGAATAGCTAGTGTTAAAATTATGTGGCCAATAACGGAGGAAGAGAAAAGG 603
|||||||||| ||||||||||| || ||||||||||||| ||| || || ||||| |||
Sbjct 834 AGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAACAGATGAGGAGAAGAGG 893
Query 604 CGAGAAAGACATTGGGGCTTTGTTGCTTTCATGAATAGAG-TCGACGGGCAAGCTGCAAA 662
||| ||||| | || ||||||||| | ||||||||||| | | || || |||||||||||
Sbjct 894 CGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCT-GATGGACAAGCTGCAAA 952
Query 663 AGATGAAATGCAAG 676
||||||||||||||
Sbjct 953 AGATGAAATGCAAG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137106255219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5