BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325637
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11020.1 | Symbols: | Protein kinase superfamily protein | ... 2069 0.0
> AT5G11020.1 | Symbols: | Protein kinase superfamily protein
| chr5:3486242-3489234 REVERSE LENGTH=1750
Length=1750
Score = 2069 bits (1120), Expect = 0.0
Identities = 1256/1318 (95%), Gaps = 23/1318 (2%)
Strand=Plus/Plus
Query 1 ATGAGGCAATTTGTTATAACAGCTCTTGTTTTACTACAAGCTTATGTTCTTCATCAATCC 60
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATGAAGCAAATTGTTATAACAGCTCTTGTTTTACTACAAGCTTATGTTCTTCATCAATCC 311
Query 61 ACATTTGTTGTGTCCCTCACTTCACATGAATCTCTTTCTCCTCAGCCTTCTGCTTTCACT 120
|||| |||| ||||||| ||| |||| ||||||| ||||||||| |||||||||||||||
Sbjct 312 ACATGTGTTATGTCCCTTACTACACAAGAATCTCCTTCTCCTCAACCTTCTGCTTTCACT 371
Query 121 CCCGACTTATCTCCTGGTT-TGCAACAAG-GAGAGAAGGAATTGCATAAACAAGATAGTA 178
|||| ||||||||||| || | |||| || ||||||||||||||||||||||||| ||||
Sbjct 372 CCCGCCTTATCTCCTGATTAT-CAAC-AGAGAGAGAAGGAATTGCATAAACAAGAGAGTA 429
Query 179 ACAACATGAGACTGGTTATTTCACTAGCAGCTGCATTTTCCTTAGTTGGGATAATCTTAG 238
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 430 ACAACATGAGACTGGTTATTTCACTAGCAGCTACATTTTCCTTAGTTGGTATAATCTTAC 489
Query 239 TTTGCTCTCTGCTTTATTGGTTTTGCCATAGGAGAAGAAACCCT-AAGAGCTCCGGTTGT 297
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 490 TTTGCTCTCTGCTTTATTGGTTTTGCCATAGGAGAAGAAA-CCTCAAGAGCTCAGGTTGT 548
Query 298 GGGTGTAGTGAAATCACATTCTCACGGTTCTTGAACCGCTTTAGTCGCTCAAAAACATTA 357
|||||||||| ||| || || |||||||| || |||||||||||||||||||||
Sbjct 549 GGGTGTAGTGGAAT--CA----CA---TTCTTGAATCGGTTTAGTCGCTCAAAAACATTA 599
Query 358 GACAAGAGAACTACAAAGCAGGGAATC-GTGTCGTTGATCGATTACAATATACTAGAAAA 416
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
Sbjct 600 GACAAGAGAACTACAAAGCAGGGAA-CAGTGTCATTGATCGATTACAATATACTAGAAGA 658
Query 417 AGGAACTAGTGGTTTCAAGGAGAGTAACATTTTGGGTCAAGGTGGATTTGGATGTGTATA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGAACTAGTGGTTTCAAGGAGAGTAACATTTTGGGTCAAGGTGGATTTGGATGTGTATA 718
Query 477 TT-TGGCCACATTAGAGAACAACATTTCAGCTGCGGTCAAGAAGCTAGACTGTGCCAATG 535
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 TTCT-GCCACATTAGAGAACAACATTTCAGCTGCGGTTAAGAAGCTAGACTGTGCCAATG 777
Query 536 AAGATGCGGCTAAGGAATTTAAGAGTGAGGTTGAGATATTGAGTAAGCTCCAGCACCCGA 595
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGATGCAGCAAAGGAATTTAAGAGTGAGGTTGAGATATTGAGTAAGCTCCAGCACCCGA 837
Query 596 ATATAATATCCCTTTTGGGTTATAGCACAAATGATACTGC-ACGATTCATCGTCTATGAG 654
|||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||
Sbjct 838 ATATAATATCCCTTTTGGGTTATAGCACGAATGATACTGCGA-GATTCATTGTCTATGAG 896
Query 655 CTGATGCCAAACGTTTCTCTGGAATCTCATTTGCACGGATCCTCTCGA-GGTTCGGCGAT 713
|||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||
Sbjct 897 CTGATGCCAAACGTTTCTCTGGAATCTCATTTACACGGATCTTCTC-AGGGTTCGGCGAT 955
Query 714 CACATGGCCTATGAGGATGAAGATTGCTCTTGATGTAACAAGGGGATTAGAATATTTGCA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CACATGGCCTATGAGGATGAAGATTGCTCTTGATGTAACAAGGGGATTAGAATATTTGCA 1015
Query 774 TGAACATTGTCATCCAGCAATCATCCACAGGGACTTGAAATCATCCAACATCTTGTTGGA 833
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1016 TGAACATTGTCATCCAGCAATCATTCACAGGGACTTGAAATCATCCAACATCTTATTAGA 1075
Query 834 TAGTAATTTCAATGCTAAGATTTCAGATTTTGGTCTTGCTGTTGTTGATGGGCCGAAGAA 893
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1076 TAGCAATTTCAATGCTAAGATTTCAGATTTTGGTCTAGCTGTTGTTGATGGGCCAAAGAA 1135
Query 894 CAAGAACCATAAACTTTCCGGGACAGTTGGCTACGTTGCACCAGAGTATCTTCTCAACGG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CAAGAACCATAAACTTTCCGGGACAGTTGGCTACGTTGCACCAGAGTATCTTCTCAACGG 1195
Query 954 CCAATTGACAGAAAAGAGCGACGTGTATGCTTTTGGAGTAGTGTTATTAGAGCTTTTACT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCAATTGACAGAAAAGAGCGACGTGTATGCTTTTGGAGTAGTGTTATTAGAGCTTTTACT 1255
Query 1014 CGGGAAAAAACCCGTGGAGAAACTAGCTCCCGGTGAATGCCAATCCATCATCACTTGGGC 1073
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGGGAAAAAACCTGTGGAGAAACTAGCTCCCGGTGAATGCCAATCCATCATCACTTGGGC 1315
Query 1074 AATGCCTTATCTCACTGATAGAACCAAGTTACCAAGCGTCATAGATCCTGCGATTAAAGA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AATGCCTTATCTCACTGATAGAACCAAGTTACCAAGCGTCATAGATCCTGCGATTAAAGA 1375
Query 1134 CACAATGGACTTGAAACACCTTTACCAGGTAGCGGCAGTGGCGGTTTTGTGCGTGCAGCC 1193
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 TACGATGGACTTGAAACACCTTTACCAGGTAGCGGCAGTGGCGATTTTGTGCGTGCAGCC 1435
Query 1194 AGAACCGAGTTATAGACCGTTGATTACAGACGTCTTGCATTCTCTTATACCTTTGGTTCC 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGAACCGAGTTATAGACCGTTGATTACAGACGTCTTGCATTCTCTTATACCTTTGGTTCC 1495
Query 1254 AATGGAACTTGGTGGAACCTTAAAAACAATCAAATGTGCTTCAATGGATCACTGTTAA 1311
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1496 AATGGAACTTGGTGGAACCTTAAAAACCATCAAATGTGCTTCAATGGATCACTGTTAA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5