BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325643
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2, S... 2377 0.0
> AT5G11100.1 | Symbols: SYTD, ATSYTD, NTMC2TYPE2.2, NTMC2T2.2,
SYT4 | Calcium-dependent lipid-binding (CaLB domain) family
protein | chr5:3532402-3535221 FORWARD LENGTH=1710
Length=1710
Score = 2377 bits (1287), Expect = 0.0
Identities = 1431/1501 (95%), Gaps = 8/1501 (1%)
Strand=Plus/Plus
Query 250 TTAAATTGGCTTAATCTTGAACTTGAAAAGATCTGGCCTTATGTAAATGAGGCAGCTTCT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TTAAATTGGCTTAATCTTGAACTTGAAAAGATCTGGCCTTATGTAAATGAGGCAGCTTCT 270
Query 310 GAGCTGATTAAAAGCAGTGTGGAGCCAGTACTTGAACAGTATACACCACCTATGTTAGCA 369
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 271 GAGCTGATTAAAAGCAGTGTGGAACCAGTACTTGAACAGTATACACCAGCTATGTTAGCA 330
Query 370 TCTCTTAAGTTCTCTAAGTTTACTCTTGGGACTGTGGCTCCTCAGTTCACAGGAGTTTCT 429
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTCTCAAGTTCTCTAAATTCACACTTGGGACTGTGGCTCCTCAGTTCACAGGAGTTTCT 390
Query 430 ATCTTAGAAAGTGAAAGTGGATCTAATGGAATTACAATGGAACTTGAAATGCAATGGGAC 489
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 391 ATCTTAGAAAGTGAAAGTGGACCTAATGGAATCACAATGGAACTTGAAATGCAATGGGAT 450
Query 490 GGTAATCCAAAAATCGTGTTGGATATCAAAACCTTACTTGGCGTGGCTTTACCGATTGAG 549
|||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||||
Sbjct 451 GGTAATCCAAAAATCGTGTTGGATGTCAAAACCTTACTTGGCGTGTCTCTACCTATTGAG 510
Query 550 GTGAAAAATATAGGATTCACAGGTGTTTTCAGGTTGATATTT-AAACCTCTTATTGATGA 608
|| ||||| |||||||||||||||||||||||| |||| ||| ||||||||| |||||||
Sbjct 511 GTCAAAAACATAGGATTCACAGGTGTTTTCAGGCTGAT-TTTCAAACCTCTTGTTGATGA 569
Query 609 ATTCCCTTGCTTTGGGGCACTTTCTTATTCACTGCGCGAGAAGAAAGGGCTTGATTTCAC 668
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 570 ATTCCCTTGCTTTGGGGCACTTTCTTATTCACTCCGCGAGAAGAAAGGGCTTGATTTTAC 629
Query 669 ACTTAAAGTTATAGGTGGTGAATTGACATCAATTCCAGGGATTTCAGATGCAATCGAAGA 728
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 630 CCTCAAAGTTATAGGTGGTGAATTAACATCAATTCCAGGGATTTCAGATGCAATCGAAGA 689
Query 729 AACTATTCGTGACGCAATAGAAGACAGTATAACATGGCCTGTTAGGAAAATCATACCTAT 788
||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 690 AACTATTCGTGACGCCATTGAAGACAGTATAACATGGCCAGTTAGGAAAATTATACCTAT 749
Query 789 ATTACCAGGAGATTACAGTGATCTGGAGTTGAAACCTGTTGGAAAATTAGATGTGAAGCT 848
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 750 TTTACCAGGAGATTACAGTGATCTGGAGTTGAAACCTGTTGGAAAATTGGATGTGAAGGT 809
Query 849 TGTGCAAGCAAAGGACTTAGCTAACAAAGACATGATTGGAAAATCTGATCCTTACGCTGT 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 810 TGTGCAAGCAAAGGACTTAGCTAACAAAGACATGATTGGAAAATCTGATCCTTACGCTAT 869
Query 909 TGTATTCATTCGCCCTTTGCGTGACAAAACCAAAAGGACCAAAACTATTAGTAACTCGTT 968
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 870 TGTATTCATTCGCCCTTTGCCTGACAGAACCAAAAAGACCAAAACTATTAGTAACTCGTT 929
Query 969 GAATCCGATTTGGAATGAACATTTTGAGTTCATTGTGGAAGATGTCTCAACTCAACATTT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GAATCCGATTTGGAATGAACATTTTGAGTTCATTGTGGAAGATGTCTCAACTCAACATTT 989
Query 1029 GACAGTAAGAGTGTTTGACGACGAAGGAGTTGGATCTTCTCAGCTTATTGGGGCTGCGCA 1088
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 990 GACAGTAAGAGTCTTTGACGACGAAGGAGTTGGATCTTCTCAGCTTATTGGGGCTGCTCA 1049
Query 1089 AGTACCGTTAAATGAACTCGTGCCCGGGAAAGTTAAAGATATTTGGTTGAAGCTAGTCAA 1148
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1050 AGTACCGTTAAATGAACTCGTACCCGGGAAAGTTAAAGATATTTGGTTGAAGTTAGTCAA 1109
Query 1149 GGATTTAGAGATCCAAAGGGATACAAAAAATCGGGGTCAG-T----T-GGAGCTCCTATA 1202
||||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||
Sbjct 1110 GGATTTAGAGATCCAAAGGGATACAAAAAATAGGGGTCAGGTGCAGTTGGAGCTCTTATA 1169
Query 1203 TTGTCCTTTAGGCAAAGAAGGCGGATTGAAGAACCCGTTTAACCCGGACTACTCATTGAC 1262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TTGTCCCTTAGGCAAAGAAGGCGGATTGAAGAACCCGTTTAACCCGGACTACTCATTGAC 1229
Query 1263 CATTTTAGAGAAGGTACTTAAGCCGGAAAGCGAGGATTCCGATGCTACGGATGTGAAAAA 1322
|||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||
Sbjct 1230 CATTTTAGAGAAGGTACTGAAGCCGGAAAGCGAGGATTCGGATGCCACGGATATGAAAAA 1289
Query 1323 ACCGGCGACCTCGAAGAAAAAAGATGTGATAGTGAGAGGAGTGTTGTCTGTGACAGTGGT 1382
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ACTGGTGACCTCGAAGAAAAAAGATGTGATAGTGAGAGGAGTGTTGTCTGTGACAGTGGT 1349
Query 1383 GGCTGCTGAAGACTTACCAGCTGTAGATTTAATGGGAAAGGCAGATGCATTTGTGGTAAT 1442
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1350 GGCAGCTGAAGACTTACCAGCTGTAGATTTTATGGGAAAAGCAGATGCATTTGTGGTAAT 1409
Query 1443 CACATTGAAGAAATCGGAATCGAAATCCAAGACAAGGGTAGTACCGGATAGCTTGAATCC 1502
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 CACATTGAAGAAATCAGAAACGAAATCCAAGACAAGGGTAGTACCGGATAGCTTGAATCC 1469
Query 1503 GATTTGGAACCAAACGTTTGATTTTGTAGTGGAAGATGCTTTGCATGATCTATTGATGCT 1562
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1470 GGTTTGGAACCAGACGTTTGATTTTGTAGTGGAAGATGCTTTGCATGATCTATTGACGCT 1529
Query 1563 AGAAGTATGGGACCATGACAAATTTGGTAAAGATAAGATAGGGAGAGTGATAATGACATT 1622
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1530 TGAAGTATGGGACCATGACAAATTTGGCAAGGACAAGATAGGGAGAGTGATAATGACATT 1589
Query 1623 GACACGAGTGATGTTGGAAGGAGAGTTTCAAGAGTGGTTTGAGTTAGATGGAGCTAAATC 1682
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 GACGCGAGTGATGTTAGAAGGAGAGTTTCAAGAGTGGTTTGAGTTAGATGGAGCTAAATC 1649
Query 1683 AGGGAAGCTTTGTGTCCATCTCAAATGGACTCCTAGGCTTAAGCTCAGAGACGCTTCTTG 1742
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1650 AGGGAAGCTTTGTGTCCATCTTAAATGGACTCCTAGGCTTAAGCTCAGAGACGCCTCTTG 1709
Query 1743 A 1743
|
Sbjct 1710 A 1710
Score = 342 bits (185), Expect = 6e-93
Identities = 203/212 (96%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTTCTCTTTGGTTTGTTCATAGGAATCGCAGTTTCTTTCGGTTTGGTAGTCGCA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGGTTTTCTCTTTGGTTTGTTCATAGGAATCGCGGTTTCTTTCGGTTTGGTCGTCGCA 60
Query 61 TTTGCACGCTATTCTAATGTCAGATCCACTCGTCGAGCTGATTTGGCAAAGACCATTGCT 120
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGCTCGCTACTCTAGTGTCAGATCCACTCGTCGAGCTGATTTGGCAAAGACCATTGCT 120
Query 121 GCATTTGCAAGAATGACTGTTCAAGATTCGAGAAAACTTCTCCCTGGAGATTTTTATCCT 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GCATTTGCAAGAATGACAGTTCAAGATTCGAGAAAACTTCTCCCGGGAGATTTTTATCCT 180
Query 181 TCCTGGATTGTGTTTTCTCAGAGACAAAAGTT 212
|| ||| |||||||||||||||||||||||||
Sbjct 181 TCTTGGGTTGTGTTTTCTCAGAGACAAAAGTT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5