BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325645
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11130.1 | Symbols: | Exostosin family protein | chr5:35423... 1591 0.0
AT5G20260.1 | Symbols: | Exostosin family protein | chr5:68368... 91.6 1e-17
> AT5G11130.1 | Symbols: | Exostosin family protein | chr5:3542320-3544724
FORWARD LENGTH=1443
Length=1443
Score = 1591 bits (861), Expect = 0.0
Identities = 962/1012 (95%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATGGAGAAGAGATTCAAGATATGGACATATAGAGAAGGAGAAGCTCCTCTGTTTCACAAG 492
Query 61 GGTCCACTCAACAACATTTACGCTATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 493 GGTCCACTCAACAACATTTACGCCATTGAAGGCCAATTCATGGACGAGATCGAGAACGGA 552
Query 121 AACAGCCGTTACAAGGCGGCTTCACCGGAGGAAGCCACCGTGTTCTACATCCCTGTAGGG 180
|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 553 AACAGCCGTTTTAAGGCGGCTTCACCGGAGGAAGCCACTGTGTTCTACATCCCCGTAGGG 612
Query 181 ATCGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ATTGTCAATATCATACGCTTTGTCTATAGACCTTACACTAGCTATGCACGTGACCGTCTC 672
Query 241 CAAAACATTGTCAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CAAAACATTGTTAAAGACTACATCTCTCTCATCTCTAACCGTTACCCTTACTGGAATCGC 732
Query 301 AGTCGTGGTGCTGACCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 360
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGTCGCGGTGCTGATCACTTCTTCCTCTCCTGTCACGATTGGGCACCTGATGTCTCAGCT 792
Query 361 GTGGATCCAGAACTATACAGGCATTTTATCAGAGCTCTCTGCAATGCCAATGCCTCCGAG 420
|||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 793 GTGGATCCAGAATTATACAAGCATTTTATAAGAGCTCTCTGCAATGCCAATTCCTCCGAA 852
Query 421 GGATTCACCCCAATGAGAGACGTTTCATTACCTGAAATCAACATTCCCCACAGCCAATTA 480
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 853 GGATTCACCCCAATGAGAGACGTTTCATTACCGGAAATCAACATTCCACACAGCCAATTA 912
Query 481 GGGTTTGTACACACCGGAGAAGCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 913 GGGTTTGTACACACCGGAGAACCGCCTCAAAACCGCAAACTCTTAGCATTCTTCGCGGGC 972
Query 541 GGTTCTCACGGAGAAGTCCGGAAAATACTTTTCGAACAATGGAAAGAAAAAGACAAAGAC 600
|||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 973 GGTTCTCACGGAGATGTCCGAAAAATACTTTTCCAACACTGGAAAGAAAAAGACAAAGAC 1032
Query 601 GTCCTTGTCTACGAGTATCTCCCCAAAACCATGAACTACACGAAAATGATGGATAAGGCA 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1033 GTCCTTGTCTACGAGAATCTCCCCAAAACCATGAACTACACGAAAATGATGGACAAGGCA 1092
Query 661 AAGTTTTGTTTGTGTCCGAGCGGTTGGGAAGTGGCGAGTCCAAGAATCGTGGAGTCTCTT 720
||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 1093 AAGTTTTGTTTATGTCCTAGCGGTTGGGAAGTGGCGAGTCCGAGAATTGTCGAGTCACTT 1152
Query 721 TACTCGGGTTGCGTTCCGGTCATCATCGCGGATTCTTACGTTCTCCCGTTCAGCGACGTG 780
||||| || || |||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct 1153 TACTCCGGCTGTGTTCCGGTCATCATAGCTGATTATTACGTCCTCCCGTTCAGCGACGTG 1212
Query 781 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCGAAGATGCCTGACATAAAGAAG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1213 TTGAATTGGAAGACATTCTCGGTTCATATTCCAATATCAAAGATGCCTGACATAAAGAAG 1272
Query 841 ATTCTAGAAGCGATATCAGAAGAAGAGTACTTAG-AGATGCAGAGGAGAGTGCTTGAAGT 899
||||||||||| ||| |||||||||||||||| | | ||||| || ||||||||||| ||
Sbjct 1273 ATTCTAGAAGCAATAACAGAAGAAGAGTACTT-GAATATGCAAAGAAGAGTGCTTGAGGT 1331
Query 900 TCGGAAACACTTTGTGATAAACAGACCTTCAAAACCATATGATATGTTGCATATGATCAT 959
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1332 TCGGAAACACTTTGTCATAAACAGACCATCAAAGCCATATGATATGTTGCATATGATCAT 1391
Query 960 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCAGAGTGA 1011
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1392 GCATTCTATTTGGTTACGGAGGCTTAATGTTCGAATCCCTCTTTCACAGTGA 1443
> AT5G20260.1 | Symbols: | Exostosin family protein | chr5:6836806-6839532
REVERSE LENGTH=1377
Length=1377
Score = 91.6 bits (49), Expect = 1e-17
Identities = 98/120 (82%), Gaps = 10/120 (8%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGATTC-AAGATATGGACATATAGAGAAGGAGAAG-CTCC-TCT-GTTTCA 56
|||||||||| |||| ||| | ||| || |||||||||| || | || | | | ||||
Sbjct 373 ATGGAGAAGAAATTCAAAG-TGTGGGTGTACAGAGAAGGAG-AGACACCGT-TAG-TTCA 428
Query 57 CAAAGGTCCACTCAACAACATTTAC-GCTATTGAAGGCCAATTCATGGACGAGATCGAGA 115
|| |||||| | |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 429 CATGGGTCCAATGAACAACATATACAGC-ATTGAAGGCCAATTCATGGACGAGATCGAGA 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5