BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325665
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11360.1 | Symbols: | Interleukin-1 receptor-associated kin... 760 0.0
> AT5G11360.1 | Symbols: | Interleukin-1 receptor-associated kinase
4 protein | chr5:3625570-3626700 REVERSE LENGTH=953
Length=953
Score = 760 bits (411), Expect = 0.0
Identities = 542/602 (90%), Gaps = 22/602 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAACATTGTAAAGCCTTTCAAACAACAACCTTCTTCATTTGCTTACCAGCCTCTC 60
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 97 ATGGGAAACATTGTCAAGCCTTTCAAGCAACAACCTTCTTCTTTTGCTTACCAGCCTCTC 156
Query 61 ACCGTCCCTCTAATTTCAGAAGTGGAGGCACAAAACGAGAATCTGAGAGTCTTCAGCTTC 120
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 157 ACCGTCCCTCTAATTCCAGAAGTGGAGGCACAAAGCGAGAATCTGAGAGTCTTCAGTTTC 216
Query 121 AAGGAATGGATGAAAGCAACGAAGAAATACAGACAAGACAGGGTCG-AACTTTGCGACAA 179
|||||||||||||||||||||||||||| ||||||||||||||||| || || |||| |
Sbjct 217 AAGGAATGGATGAAAGCAACGAAGAAATCCAGACAAGACAGGGTCGTAA-TTCGCGATGA 275
Query 180 TCCCTATATTCGATTTCGAACATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 239
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TCACTATATTCGA--T----CATTCTACAAGGGCTACATCGATAACACCACATTTGCACC 329
Query 240 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATAAAAGTTCACA 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 330 ATCAAGAACTAAAACCGGTACCCCTGTTTCTGTTGTCGAATATCTTCATGGCAGTTCACA 389
Query 300 GGCTCTACAAGAGTGGGTGGCCGATGTTTACATATTTGGCGTGATCTTGCTTGAGATTTT 359
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 390 GGCTCTACAAGAGTGGGTGG---A------CATATTTGGCGTGATCTTGCTTGAGCTTTT 440
Query 360 AGCTGGTTCGA-AAGCTAGATCAAGAAATATGAAGAATCAAAGCTCCGATGATTGGACTG 418
|| |||||| | ||| |||||||| | | |||||||||||||||| | ||||||||||
Sbjct 441 AGTTGGTTC-ACAAGATAGATCAACAGCTTTGAAGAATCAAAGCTC--A-GATTGGACTG 496
Query 419 GATCTTTCTTGCCCGATAATTATAAAATTGAGGAAATAATCGATCCCCGACTAGGAAGTG 478
| ||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| |
Sbjct 497 GGTCTTTCTTGCCCGATAATTATAAGATTGGGGAAATAATCGACCCCCGAATAGGAAGCG 556
Query 479 ATTATCCTGTGGATGCGGCAACAATGATGGTCACACTCATCCAAAGTTGCACCAAGCGGG 538
||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| ||||
Sbjct 557 ATTATCCTGTGGATGCGGCCACAAAGATTGTCACACTCATCCAAAGATGCACCAATCGGG 616
Query 539 ACAAGAAGAATCGACCACTGATGCAACAAGTTTTGGATGTTCTGAATAATATTGCAGAGA 598
|||||||||| |||||| |||||||| |||||||||||| ||||||| ||||||||| ||
Sbjct 617 ACAAGAAGAAACGACCATTGATGCAAGAAGTTTTGGATGCTCTGAATTATATTGCAGGGA 676
Query 599 TT 600
||
Sbjct 677 TT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5