BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325669
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11410.1 | Symbols: | Protein kinase superfamily protein | ... 1517 0.0
> AT5G11410.1 | Symbols: | Protein kinase superfamily protein
| chr5:3638431-3639883 REVERSE LENGTH=1011
Length=1011
Score = 1517 bits (821), Expect = 0.0
Identities = 950/1012 (94%), Gaps = 10/1012 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAACTGTCTAAAGCCTCTC-----A-AACCTTCTCCAGCTTCTCCCAAGCCTCTC 54
|||||||||||||||||||||||| | ||||| || ||||||||||||||||||||
Sbjct 1 ATGGGAAACTGTCTAAAGCCTCTCAAAGAACAACCTCCTTCAGCTTCTCCCAAGCCTCTC 60
Query 55 ATCAAT-CCTCCAATTTCAGGGGAGTCAGAAAATGAGTATTTGAGAGAGTTCAGCTTTG- 112
| | || ||| ||| ||||| |||| ||| ||| ||| |||||| |||||| || ||||
Sbjct 61 A-CCATCCCTTCAAGTTCAGTGGAGCCAGTAAAGGAGAATTTGAAAGAGTTTAGATTTGC 119
Query 113 CGAAATTGAGCAAGGCAACAAAGAAATTCAGACAATACATGGTCATAAAAGGTAATGATA 172
|| |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 120 CG-AATTGAACAAGGCAACAAAGAGATTCAGAAAATACATGGTCATAAAAGGTAATGATA 178
Query 173 ACGGATGTACTCGAACATTCTACCAAGGCTACATCAATGAGACAACCTTTGCTCCATCAA 232
| || | |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 179 ATGGGTTTACTCGAACATTCTACGAAGGCTGCATCAATGAGACAACCTTTGCTCCATCAA 238
Query 233 GAACTGGAATCGCTGTCTCTGTCTTGGAATGTTATCAAGATAATTCGCAGACTCTACAAG 292
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 GAACTGGAATCACTGTTTCTGTCATGGAATGTTATCAAGATAATTCGCAGACTCTACAAG 298
Query 293 ATTGGAAGGAAGAAGTGAAGTCTCTTGGACGTATTTCTCATCCCAATTTAGTCAAGCTTT 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 ACTGGAAGGAAGAAGTGAAGTCTCTTGGACGTATTTCTCATCCCAATTTAGTCAAACTTT 358
Query 353 TAGGCTATTGTTGTGAAGAAAATAAATCATTCTTAGTTTTCGAATACTTGCATAAAGGAA 412
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 TAGGCTATTGTTGTGAAGAAAACAAATCATTCTTAGTTTTCGAATACTTGCATAAAGGAA 418
Query 413 GTTTGGACCGTCACATTTTCGGAAAAGAAGAAGAAGCATTGCCGTGGGAAACACGGGTCA 472
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 GTTTGAACCGTTACATTTTCGGAAAAGAAGAAGAAGCATTACCGTGGGAAACACGGGTCA 478
Query 473 AGATAGCCATAGGAGCAGCTCAAAGTATTGCATTTCTACATTCTGTCAAGAACAGCGCGC 532
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 AGATAGCCATAGGAGCAGCTCAAAGTATTGCATTTCTACATTGGGTCAAGAACAGCGCGC 538
Query 533 TTTATCGTGAACTCAGAATGTTTAACATTTTGCTTGACGAGAACTACAATACAAAATTGT 592
| ||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 539 TATATCGAGAACTCAGAATGTATAACATTTTGCTTGACGAGCACTACAACACAAAATTGT 598
Query 593 TCTATCTTGGATCAAAGAAACTATGTCTGTTAGAAGAAAGTGTGACGACTGCATTCATAG 652
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 599 TCTATCTTGGATCAAAGAAACTATGTTTGTTAGAAGAAAGCGTGACGACTGCATTCATAG 658
Query 653 GAAGAACTGTATATTTAGCTCCTGAATATATAATCTCAGGTCATTTGGGAACGAAGAGTG 712
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GAAGAACTGTATATATACCTCCTGAATATGTAATCTCAGGTCATTTGGGAACGAAGAGTG 718
Query 713 ATGTGTATACATTTGGTGTGATCTTGTTTGAGATTTTAACTGGTTTGAAAGCTTCAGATG 772
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 719 ATGTGTATACATTTGGTGTGATATTGTTAGAGATTTTAACTGGTTTGAAAGCTTCAGATG 778
Query 773 GTAAAAAGAATGAGAACATGCAAAGCTTACATATCTGGACTAAACCTTTCTTGTCTGATC 832
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 779 GTAAAAAGAATGAGAACATGCAAAGCTTACATGTATGGACTAAACCTTTCTTGTCTGATC 838
Query 833 AATCTAAAATCCGGGAAATCATCGATCCTCGACTTGGTAATGATTATCCTGTGAATGCAG 892
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 839 AATCTAAAATCCGGGAAATCATCGATCCTCGACTTGGGAACGATTATCCTGTGAATGCAG 898
Query 893 CGACGCAGATGGGAAAACTCATCAAAAGATGCATCAAGTTGGACACGAGGAAACGACCAT 952
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 CGACACAAATGGGAAAACTCATCAAAAGATGCATCAAGTTGGACACAAGGAAACGACCAT 958
Query 953 CTATGCAACAAGTCTTTGATGGTTTGAATGATATTGCAGAGATTAAAGATTA 1004
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGATGCAACAAGTCTTTGATGGTTTGAATGATATTGCAGAGATTAAAGATTA 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5