BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325696
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11710.1 | Symbols: | ENTH/VHS family protein | chr5:377281... 1404 0.0
> AT5G11710.1 | Symbols: | ENTH/VHS family protein | chr5:3772818-3776662
FORWARD LENGTH=2192
Length=2192
Score = 1404 bits (760), Expect = 0.0
Identities = 813/838 (97%), Gaps = 6/838 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTCATGAAGGTCTTCGATCAAACGGTTCGAGAGATAAAGAGGGAGGTGAATCTG 60
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 164 ATGGATTTCATGAAGGTCTTCGATCAAACTGTTCGAGAGATAAAAAGGGAGGTGAATCTG 223
Query 61 AAAGTTTTGAAGGTCCCTGAGATGGAGCAAAAGGTATTGGATGCTACAGATAATGAGCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AAAGTTTTGAAGGTCCCTGAGATGGAGCAAAAGGTATTGGATGCTACAGATAATGAGCCT 283
Query 121 TGGGGTCCCCATGGTACTGCATTGGCAGAGATAGCACAGGCCACGAAGAAATTCTCGGAG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 284 TGGGGTCCCCATGGTACTGCATTGGCAGAGATAGCTCAGGCCACGAAGAAATTCTCGGAG 343
Query 181 TGCCAGATGGTTATGAGTGTTTTGTGGACTAGACTAAGTGAGACAGGAAAAGATTGGCGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TGCCAGATGGTTATGAGTGTTTTGTGGACTAGACTAAGTGAGACAGGAAAAGATTGGCGA 403
Query 241 TATGTCTACAAGGCATTGGCTGTTATCGATTATCTGATTTCAAATGGATCAGAACGAGCG 300
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 404 TATGTCTACAAGGCATTGGCTGTTATTGATTATCTGATTTCGAATGGATCAGAACGAGCG 463
Query 301 GTTGATGAGATTATTGAGCATACGTACCAAATATCTTCACTCACGAGTTTTGAGTATGTT 360
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 464 GTTGATGAGATTATTGAGCATACTTACCAAATATCTTCACTCACAAGTTTTGAGTATGTT 523
Query 361 GAACCAAAT-GGAAAGGATGTGGGAGTCAACGTGAGAAAGAAGGCGGAAAACATAGTCGC 419
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 524 GAACCAAATGGGAAA-GATGTGGGAATCAACGTGAGAAAGAAGGCGGAAAACATAGTCGC 582
Query 420 TCTCTTGAATAATAAAGAGAAAATCTCAGAAATCAGAGACAAAGCAGTAGCAAATCGTAA 479
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCTTTTAAATAATAAAGAGAAAATCTCAGAAATCAGAGACAAAGCAGTAGCAAATCGTAA 642
Query 480 CAAGTATGTTGGCCTCTCATCAACGGGAATAACATATAAATCTGGTTCCTCAGCTTCATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CAAGTATGTTGGCCTCTCATCAACGGGAATAACATATAAATCTGGTTCCTCAGCTTCATT 702
Query 540 TGGTGGTAGTTTTCAAAGTGGTTCAAGCAATCATGACAGCTACAAGGATA-AGGATTCCA 598
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 703 TGGTGGTAGTTTTCAAAGTGGTTCAAGCAATTTTGACAGCTACAAGGATAGAG-ATTCCA 761
Query 599 GAGAAGAGAAGAATGACTACGAGTCTTTTCAAAAGTCAAGACGTGGTGTTAAAAGC-GAG 657
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 762 GAGAAGACAAGAATGACTACGAGTCTTTTCAAAAGTCAAGACGTGGTGTTAAAA-CTGAG 820
Query 658 GAGCAAAGCTACACTTCTAAGAAGAGTTTTTCACGTTATGGCAGCACGGACCATGACAAT 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 821 GAGCAAAGCTACACTTCTAAGAAGAGTTTTTCACGCTATGGCAGCACGGACCATGACAAT 880
Query 718 CTATCCAGTGGAAAAAAGTCACCCGATTCTGCCAAACATAGTTCATATGTATCTGCAGCT 777
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 881 CTATCCAGTGGTAAAAAGTCACCCGATTCTGCCAAACATAGGTCATATGTATCTGCAGCT 940
Query 778 CCTTCAAACAACGATGATGATTTCGATGATTTTGATCCACGTGGAACTTCCAGCAATA 835
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 941 CCTTCAAACAACGATGATGATTTTGATGATTTTGATCCACGGGGAACTTCCAGTAATA 998
Score = 1277 bits (691), Expect = 0.0
Identities = 790/836 (94%), Gaps = 14/836 (2%)
Strand=Plus/Plus
Query 900 CAGTGCCAAACAAGTGGACCTTTTTGGAGGGGATCTGATTGGTGACCTCTTGGATTCTGG 959
||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1012 CAGTGCCAACCAAGTGGACCTTTTTGGAGGAGATCTGATTGGTGACTTCTTGGATTCTGG 1071
Query 960 GCCAACAGAAACATCTTCCACCAACAACAACGAGAATTTTCAAGAGGCGGACTTGTTTGC 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1072 GCCAACAGAAACATCTTCCACCAACAACAACGAGAACTTTCAAGAGGCGGACTTGTTTGC 1131
Query 1020 TGATGCAGCTTTTGTATCAGCCTCGGCTCAGGGAACTGAATTTGGGTCACAGACACAGAA 1079
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1132 TGATGCAGCTTTTGTATCAGCCTCGGCTCAGGGAGCTGAATTTGGGTCACAGACACAGAA 1191
Query 1080 AGAGGTTGATCTTTTCTCTGCGTCTGAACCTTCTTTCACAGTTTCTTCAGCTCCTCCGAC 1139
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1192 ACAAGTTGATCTTTTCTCTGCGTCTGAACCTTCTGTCACAGTTTCTTCAGCTCCTCCGAC 1251
Query 1140 GGTTGATCTTTTTGCATCTTCTGAATCAGTTGCAAGCCCAGAAGCCAAGATATCTAA-AC 1198
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 1252 GGTTGATCTCTTTGCATCTTCTGAATCAGTTGTAAGCCCAGAAGCCAAGATATC-AATAC 1310
Query 1199 CCGAGTCTATGACAAATCCCAACATTGTTGACCCTTTTGCTGCAGTTCCTATGGATAATT 1258
| ||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1311 CTGAGTCTATGGCTACTCCCAACATTGTTGACCCATTTGCTGCAGTTCCTATGGATAATT 1370
Query 1259 TTGATGGATCTGATCCTTTTGGTGCCTTCACTTCCCACTCAGCTTCAGTCTCTACAGGTC 1318
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1371 TTGATGGATCAGATCCTTTTGGTGCCTTCACTTCCCACTCGGCTTCAGTTTCTACAGGTC 1430
Query 1319 CACAAGCTCCAAGTGTACATGGGAGTGCAACAAACACCACAAGCCCGCTGTCTTTGGCAG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1431 CACAAGCTCCAAGTGTACATGGGAGTGCAACAAACACCACAAGCCCGCTGTCTTTCGCAG 1490
Query 1379 GCTCGAAGCCACAACACTTGCAAAAGAAAGATCCTTTCCAGGTGAAATCTGGAGTTTGGG 1438
||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1491 ACTCGAAGCCACAACATTTGCAAAAGAAAGATCCTTTCCAGGTGAAATCAGGAATTTGGG 1550
Query 1439 CAGATTCGCTGAGCCGTGGACTGATTGATCTCAATATAACTGCTCCCAAAAAAGCTTCTC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CAGATTCGCTGAGCCGTGGACTGATTGATCTCAATATAACTGCTCCCAAAAAAGCTTCTC 1610
Query 1499 TAGCTGATGTGGGCGTTGTGGGTGATCTGAGCAATGATGAAGGGAACAAAGCATCTGCTG 1558
||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1611 TAGCTGATGTGGGTGTTGTGGGGGATCTGAGCAATGAAGATGGGAACAAAGCATCTGCTG 1670
Query 1559 CATCGTACTACTCAGGCTGGTCCATGGGTACAGGATCCGGGCTCGGTAAAACCGGTCTAT 1618
||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 1671 CATCGTACTACTCAGGCTGGTCCATGGGTGCAGGATCCGGGCTTGGTAAAACTGGCCTAT 1730
Query 1619 ACAGT-----GCA-CAGCAGCAACAACAACAACAA------GCACCTGATATCTCAGATG 1666
||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1731 ACAGTACACAGCAGCAGCAGCAACAACAACAACAACAACAAGCACCTGATATCTCAGACG 1790
Query 1667 ATTTCTTCTCCAGCCTCAGTAACCAAAGGTACCAATCTGGTGGCTTTAAGCAGTGA 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 ATTTCTTCTCCAGCCTCAGTAACCAAAGGTACCAATCTGGTGGCTTTAAGCAGTGA 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5