BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325730
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12060.1 | Symbols: | Plant self-incompatibility protein S1... 614 3e-175
AT5G12070.1 | Symbols: | Plant self-incompatibility protein S1... 590 5e-168
> AT5G12060.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:3894919-3895371 REVERSE LENGTH=453
Length=453
Score = 614 bits (332), Expect = 3e-175
Identities = 413/452 (91%), Gaps = 6/452 (1%)
Strand=Plus/Plus
Query 1 ATGACAAACATCCTAAAAACACAAGTTCATGTGGTTGTAATATCTCTACTCATCCAAATA 60
|||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1 ATGAAAAACATCCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCAAAATA 60
Query 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACTATAAAAACAATGGTG 120
||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||
Sbjct 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACT-TCAAAA-A-TGGTG 117
Query 121 AGGATCACAAACCGCCTTGGAGATGGTTCGACCTTAAACCTTCATTGCAAGTCCTCAGAT 180
|||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||
Sbjct 118 AGGATCACAAACCGCCTTGGTGATGGTTTGACCTTAAACCTTCATTGTAAGTCCGCAGAT 177
Query 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATAGCTCTTGGTCGTTTAAGTTTAGACCA 240
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 178 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAGTTTAGAACA 237
Query 241 ACTATTATTGTTGGATCGACAATTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAAA 300
| |||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 238 AGTATT---GTTGGAACGACACTTTTCTATTGTCATTTCACATGGCCTGGACAATCAAAA 294
Query 301 AGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTAGGGGTATTCCATGCATCTAT 360
|||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 295 AGGTTTGACATTTACGATGATGACAGAGATGGTGTTCGTAGTCATATTTCATGCATCAAT 354
Query 361 TGTATATGGGATATAACCAAAGATGGGCCGTGCAGGTTTAATGAAAGTGATCATGCATTT 420
||||| |||||||||| || | | ||||| |||| ||||| |||||||||||||||||||
Sbjct 355 TGTATCTGGGATATAAGCATACAAGGGCCATGCATGTTTAGTGAAAGTGATCATGCATTT 414
Query 421 GATATATGTTATGATTGGAATGGAAATCCAAG 452
|||||||||||||||||||||| |||| |||
Sbjct 415 AATATATGTTATGATTGGAATGGGAATCTAAG 446
> AT5G12070.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:3896950-3897408 REVERSE LENGTH=459
Length=459
Score = 590 bits (319), Expect = 5e-168
Identities = 412/457 (90%), Gaps = 6/457 (1%)
Strand=Plus/Plus
Query 1 ATGACAAACATCCTAAAAACACAAGTTCATGTGGTTGTAATATCTCTACTCATCCAAATA 60
||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGACAACCATGCTAAAAACACAAGTTCATGTGGTGGTAATATATCTACTCATCCAAATA 60
Query 61 GCTTTCTCACAAGTGAAAACCGATTTTGATGTTAATTGGTCTACTATAAAAACAATGGTG 120
|||||||||||||||||| ||| || |||| | || ||||||||| ||||| || |||||
Sbjct 61 GCTTTCTCACAAGTGAAACCCGGTTCTGATCTAAAGTGGTCTACTTTAAAATCAGTGGTG 120
Query 121 AGGATCACAAACCGCCTTGGAGATGGTTCGACCTTAAACCTTCATTGCAAGTCCTCAGAT 180
| |||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||
Sbjct 121 ACGATCACAAACCGCCTTGGCGATGGTTCGACCTTAAAACTTCATTGTAAGTCCGCAGAT 180
Query 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATAGCTCTTGGTCGTTTAAGTTTAGACCA 240
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 181 GACGATCTTGGCCTCAAAATCCTCGCTCCGAATGGTTCTTGGTCGTTTAAATTTAGACCA 240
Query 241 ACTATTATTGTTGGA-TCGACAATTTTCTCTTGTCATTTCACATGGCCTGGACAATCAAA 299
| |||| || |||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGTATTGTTCCTGGAGT-GACACTTTTCTTTTGTCATTTCACATGGCCTGGACAATCAAA 299
Query 300 AAGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTAGGGGTATTCCATGCATCTA 359
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 ATGGTTTAACATTTACGATGATGACAGAGATGGTGTTCGTATGGGTATTCCATGCATCTA 359
Query 360 TTGTATATGGGATATAACCAAAGATGGGCCGTGCAGGTTTAATGAAAGT-GATCATGCAT 418
||||| ||||||||| |||| ||||||| |||||||||| ||||| | ||| ||||||
Sbjct 360 CTGTATCTGGGATATAGGCAAATATGGGCCATGCAGGTTTAGTGAAA-TAGATGATGCAT 418
Query 419 TTGATATATGTTATGATTGGAATGGAAATCC-AAGAT 454
|| |||| |||||||||||||||||||| || |||||
Sbjct 419 TTAATATTTGTTATGATTGGAATGGAAA-CCGAAGAT 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5