BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325766
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 2983 0.0
> AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr5:4035294-4038795 REVERSE LENGTH=2573
Length=2573
Score = 2983 bits (1615), Expect = 0.0
Identities = 1849/1962 (94%), Gaps = 15/1962 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCCGGTGACGCGACAGCTTTGCTTTTGGCGAAAATCCGAAGCTTGGAGCCAGAT 60
||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct 192 ATGGATTCCGGTGACGCGACATCTTTGCTTTTGACGAAAATTCGAAGCTTGGAGCCAGAT 251
Query 61 TATGCTCCGAAGATTATTGGGTATTTGCTTTTACAGGATTTTGGTGATAGAGACTTGATG 120
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 TATGCTCCTAAGATTATTGGGTATTTGCTTTTACATGATTTTGGTGATAGAGACTTGATG 311
Query 121 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGATTATTTCGAAAGTGAAGAGTCAT 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 312 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGACTATTTCGAAAGTGAAGAGTC-T 370
Query 181 -TTGGGAATTTTCTCGAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 239
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTGGGGATTTTCTCCAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 430
Query 240 CCCTATCTCTCGACCACCTATTAACGGTAGAGGAAGCTCTCACTCTAATGGGTTTATGGA 299
||||||| ||| || ||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 431 TCCTATCTGTCGTCCTCCTCTTAACGGAAGAGGAAGCTCTCACTCCAATGGGTTTATGGA 490
Query 300 TTTCCGTAGAAACTCTCCATCTTCTCCTTCTTCTACCTCTCCTTGGTCACTCAACAACTC 359
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 491 TTTCCGTAGAAACTCTCCGTCTTCTCCTTCTTCTACCTCTCCTTGGTCATTCAACAACTG 550
Query 360 TATGAACCCTATTAATGGGAATAACCCCCACATTTCCCCCAAACACACTCCGATCTCGAA 419
||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 551 TATCAACGGTAATAATGGGAATAACCCCCACATTTCCCCTAAACACACTCCGATCTCGAA 610
Query 420 ACCCTTTAGCTCTCACCAAAGCAATGGAGTTTCTGCTACAGATTCTGGTAGTGCTGACGC 479
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 611 ACCCTTTAGCTCTCACCAAAGCAATGGACTTTCTGCTACACATTCTGGTAGTGCTGACGC 670
Query 480 TGGTGGTAATGCTGATTTACTGGATGACCAGCAGCTTAATGATTACCTTTCTTTTCTCGA 539
|| |||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||
Sbjct 671 TGCTGGTGGTGCTGATTTACTTGATGATCAGCAGCTTAATGATTGCCTTTCGTTTCTCGA 730
Query 540 CGATTCCTGTTCAAAAACCGAGGATCTTGTGGATCCTAGGATTCCTTTGGACTACTCTGT 599
|||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 731 CGATTCTTGTTCTAAAACCGAGGATCTTGTGGATCCTAGCATTCCTTTGGATTACTCTGT 790
Query 600 AGA---CGATGGAGAAACCCATCTGCACAGGAGGAGTTTCTC-GGCAGATGCGTCTTTTG 655
||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 791 AGATGGTGATGGTGAAACCCATCTGCACAGGAGGAGTTTCTCTTG-TGATGCGTCTTTTG 849
Query 656 GGTCCGGAGATGATGGATTTGGTTCTGGATGCAAACCATGTGTGTATTTTAGTCGAGGTT 715
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 850 TGTCCGGAGATGATGGATTTGGTGGTGGATGCAAACCATGTGTGTATTTTAGTAGAGGTT 909
Query 716 TGTGCAAGAACGGAGAAAGCTGCAAGTTTATCCACGGCGGATATCCGGAGAATATGGATG 775
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 910 TGTGCAAGAATGGAGAAAGCTGCAAGTTTATCCACGGTGGATATCCGGATAATATGGATG 969
Query 776 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACCAGG 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 970 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACGAGG 1029
Query 836 AGATGATGAGGTTGAAATTGGCTTACCAGCAGCAGAGGCTGACTTCTCAAATCCTGGGTA 895
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1030 AGATGATGAGGCTGAAATTGGCTTACCAGCAGCAGAGGTTGGCTTCTCAAATCCTGGGTC 1089
Query 896 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGATTTTCTCTTGCAGCAGCACGCTCAAA 955
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1090 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGACTTTCTCTTGCAGCAGCATGCTCAAA 1149
Query 956 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1209
Query 1016 AGAGGATGGAACTAATGGCAATGCATTTAGGTGATCAGTCAAACTCCGCATCTAGACAGA 1075
|||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1210 AGAGGATGGAGCT---GGCAATGCATTTAGGTGATCAGTCAAATTCGGCATCTAGACAGA 1266
Query 1076 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1326
Query 1136 GCCTTTTTGGAACAGTGCAAGATGTGCGGATCCCATACCAGCAGAAGCGTATGTTTGGCT 1195
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1327 GCCTCTTTGGAACAGTCCAAGATGTGCGGATCCCATACCAACAGAAGCGTATGTTTGGCT 1386
Query 1196 TTGTTTCATTTGCTCATCCTGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TTGTTTCATTTGCTCATCCCGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1446
Query 1256 TCATTTGCGACTCACGGGTGCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1315
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TCATTTGCGACTCACGGGTTCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1506
Query 1316 AGAAGCAACAGCAACTGCTGCAACAGCAGATTGAGCGGGGAAATTACTCCCCGTGCTCCA 1375
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1507 AGAAGCAACAGCAACTGCTACAACAGCAGATTGAGCGAGGAAATTACTCCCCGTGCTCCA 1566
Query 1376 GTCCTTCTGGGGTTGATCCTAGAGAACAGTCTGATTTCCACCTTGTAGGTTCGAAGATGC 1435
|||| |||||| ||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1567 GTCCATCTGGGATTGATCCTAGAGAACAGTCTGATTTCCACCTTG--G-TTCAAAGATGT 1623
Query 1436 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATGGAGCAGGCTGATCTCCTGAGGGCTA 1495
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1624 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATAGAGCAGGCTGATCTCCTGAGGGCTA 1683
Query 1496 TTGAACTCGAAAGAAGACGTTTCATAAATTTGCAGCTTCCTGAGTTCAAGAATAGTGTAA 1555
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1684 TTGAACTCGAAAGAAGACGTTTCATTAATTTACAGCTTCCTGAGTTCAAGAATAGTGTAA 1743
Query 1556 TGCAGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCGTCTGCCAGCA 1615
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1744 CGCTGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCATCTGCCGGCA 1803
Query 1616 ACCAAAGCCCTGATTTTCAATCTGAACTTA-CAGTTGCAGATGCTTTAGAAGTAGTTGAT 1674
| |||||||||||||||||||||||||||| | || |||||||||||| ||||| ||||
Sbjct 1804 ATCAAAGCCCTGATTTTCAATCTGAACTTAACGGT-GCAGATGCTTTAAAAGTAACTGAT 1862
Query 1675 GATACCTCGGAGCTGCATCCTTACCCTGTAATCAACCCAATGAGTGTTAACAATAATTAC 1734
||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 1863 GATACCTTGGAGCTGCATCCTTACCCAGTAGTCAACCCAATGAGTGTTAACAATAGCTAC 1922
Query 1735 TCAAACGGTGCAAAAGAAGGGACTGACAAGAGTGAATTGCTTGAACCCGATACGGGAAGC 1794
||||||||||||||||||| |||| ||||||||||||||||||| |||||| | ||||||
Sbjct 1923 TCAAACGGTGCAAAAGAAGAGACTAACAAGAGTGAATTGCTTGATCCCGATTCTGGAAGC 1982
Query 1795 ACTATAGAGCTTGTTCTTCCCAGTAACCTGTTCCCTTCTGCATCATCTACCGATGATCAC 1854
|| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1983 ACCATTGAGCTTGTTCTTCCTAGTAACCTCTTCCCTTCTGCATCATCTACCGATGATCAC 2042
Query 1855 AAAACCGATGATTCTGCTGCAACTAATGCAAAAGTTGGAGTCTCCTGTACTAATGGAAAT 1914
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 2043 AAAACCGATGATTCTGCTGAAACTAATGCAAAAGTTGGAGTCTCCTCTACTAATGAAAAT 2102
Query 1915 GACAATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 1956
||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2103 GACCATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 2144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96887051850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5