BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325778
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12920.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1929 0.0
> AT5G12920.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:4077773-4082585 REVERSE LENGTH=1863
Length=1863
Score = 1929 bits (1044), Expect = 0.0
Identities = 1143/1191 (96%), Gaps = 6/1191 (1%)
Strand=Plus/Plus
Query 283 GGTATATTCATT-GTGTCTGTCACAAGATCAGGATGCTTGATGGTGCATGACTTTGAATC 341
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGTATATTC-TTAGTGTCTGTCACAAGATCAGGATGCTTGATGGTGCATGACTTTGAATC 590
Query 342 ACTATATTGCCAGAGTAAGGTTGGCCCAGGTTCTTTGGAAGATGAAAGTAAGCATGTTGT 401
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 591 TCTATATTGCCAGAGTAAGCTTGGCCCAGGTTCTGCGGAAGATGAAAGTAAGCATGTTGT 650
Query 402 GCATTTTTCTTACCCTCCCGGAAGGGAATTCGATGTCGCTAGATGGAATCCTTCAAACCA 461
|||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 651 GCATTTCTCTTACCCTCCCGGTAGAGAATTTGATGTTGCTAGATGGAATCCTTCAAACCA 710
Query 462 GAATGAGGTAGCCTGCACATCGAGGAAACATGATCAAGTGCTTATCTTCGATATCAGTTA 521
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 711 GAATGAGGTAGCCTGTACATCAAGGAAACATGATCAAGTGCTTATCTTCGATATCAGTTA 770
Query 522 CATGTCTCCCAAACCAACTGAGGTATTGCAAACTAGACAGAAGCTATCGATTATTGGCCG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CATGTCTCCCAAACCAACTGAGGTATTGCAAACTAGACAGAAGCTATCGATTATTGGCCG 830
Query 582 CAAAGTTTCTAGAGGTTTATCTGATGTTGCCATGACTAGTGATGAGGATTCGAGAATATT 641
|||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 831 CAAAATTTCTAGAGGTTTATCTGATGTTGCCATTACAAGTGATGAGGATTCGAGAATATT 890
Query 642 TTCTCCAGATACACTTGGTATGGTTCATGTGTGGGATAGAAGAGCAGGAGTGTCTCCATG 701
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 891 TTCTCCAGATACACTTGGTATGGTTCATGTGTGGGATCGAAGAGCAGGAGTGTCTCCATG 950
Query 702 CATTGAACTTTCAACAGACAGATATGATTCAATCAAGAGTATTCAAATATATGTGGATAA 761
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 951 CATTGAACTTTCAACAGACAGATATGATTCGATCAAGAGTATTCAAATATATGTGGATAA 1010
Query 762 TCAGACTATTTTTGGAGCTGGTAAAGAAGGAATCATTCATATCTGGGACCTTCGTGGAGG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCAGACTATTTTTGGAGCTGGTAAAGAAGGAATCATTCATATCTGGGACCTTCGTGGAGG 1070
Query 822 AAGAAACTCTTCTGCTTTTCAGAGCCGCAAAGATGTAAGTCTTACAAGGGGCGAGCTGGA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AAGAAACTCTTCTGCTTTTCAGAGCCGCAAAGATGTAAGTCTTACAAGGGGCGAGCTGGA 1130
Query 882 ATTGGCTATGGCAATGAGCCAGTTGCCTTTAGCATCTCTACATCTCGCACCGATGCTGCA 941
||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 1131 ATTGGCTATGGCAATGAGCCAATTGCCTTTAGCATCTCTACATCTTGCACCGAAGCTGCA 1190
Query 942 GAAGATTGCATCTCTGAAGGCACAGTCAAAAATC-TTGCCCAAGGAAATCCATTCCATTA 1000
||| ||||||||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1191 GAAAATTGCATCTCTTAAGGCACAGTCAGAAATCGTT-CCCAAGGAAATCCATTCCATTG 1249
Query 1001 ATGTAAACCCGTCTTCTCCTCATCAACTTGCATTTCACCTTGACGATGGTTGGTCCGGTG 1060
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGTAAACCCATCCTCTCCTCATCAACTTGCATTTCACCTTGACGATGGTTGGTCCGGTG 1309
Query 1061 TTTTTGACATATATAAATCTGAAGTTACTCATGTACATTGCCCTCCCCCAGCTTGGTTGG 1120
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1310 TTCTTGACATATATAAATCTGAAGTTACTCATGTACATTGCCCTCCTCCAGCATGGTTGG 1369
Query 1121 ATGGTTCCGACAGTTCAGCTGATTTGATCTTGCGGAAACCATCATGGCTGCCAGCATCAT 1180
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1370 ATGGTTCCAACAGTTCAGCTGATTTAATCTTGCGGAAGCCATCATGGCTGCCAACATCAT 1429
Query 1181 CTATTTATGTTGTTGGGTCCATGAGCGAGAAAGGGATTCATGTTCTTGATTTCCATCCAA 1240
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1430 CTATTTATGTGGTTGGGTCCATGAGCGAGAAAGGGATTCATGTTCTTGATTTTCATCCAA 1489
Query 1241 GCTCCAGGTCTCCTTGTCACGTTGACTACGATGAGGATACACAGAGAAACGAGAAGAGAG 1300
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1490 GCTCCAGGTCTCCTTGTCATGTTGACTACGATGAGGATACACAGAGAAATGAGAAGAGAG 1549
Query 1301 ACA-GATGTAATCACAGTAACAAGTTTGTTTCATTGTCTGAAACTGTCACAGGTTGTGCT 1359
||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1550 ACAAG-TGTAATCACAGAAACAAGTTTGTCTCATTGTCTGAAACTGTCACAGGTTGTGCT 1608
Query 1360 GCACATCCTCTCAACGGCATGATCGTAGCTGGAACTCAGAATTCGTCTTTGCTGGTGATC 1419
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1609 GCGCATCCTCTCAACGGCATGATCGTAGCTGGAACTCAGAATTCGTCTTTGCTGTTGATC 1668
Query 1420 GCGCAGAGGCATTGCTCATCTTCATCAGAAACTGCAGAAGGTGAATTGTAG 1470
|| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GCTCAGATGCATTGCTCATCTTCATCAGAAACTGCAGAAGGTGAATTGTAG 1719
Score = 342 bits (185), Expect = 5e-93
Identities = 211/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 60 GCGGCCATGGAAGCGATCTTTAATCGAAGTGACTGGACGATTGGAGTCAGCTTACCGACA 119
||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 213 GCGACCATGGAAGCGATCTTTAATCGAAGTGAATGGACGATTGGATTCAGCGTACCGACA 272
Query 120 CGAACTCTATTCTCTAGTTGCTCATTCCTACTTGGAGATTGGGAAGTTTTCACATTTTTA 179
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 273 CGAACTCTATTCTCGAGTTGCTCATTCCTACTCGGAGATTGGGAAATTTTCACATTTTTA 332
Query 180 TCACTTGAACGAGAACCCATGTATAACCCATATGAGGGAGATCCAACGCCTATATCATTG 239
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||
Sbjct 333 TCACTTGAACGAGAACCCATGTATAACCCATATGATGCAGATCCAAAGCCTATATCAATG 392
Query 240 CCCGACAATGCGAGGTGTTGCAGGACTAGATTTTGATAACCGGG 283
|||||||||||||||||||||||| || ||||||||||||||||
Sbjct 393 CCCGACAATGCGAGGTGTTGCAGGGCTTGATTTTGATAACCGGG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5