BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325857
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13830.1 | Symbols: | FtsJ-like methyltransferase family pr... 1053 0.0
> AT5G13830.1 | Symbols: | FtsJ-like methyltransferase family
protein | chr5:4467363-4468487 FORWARD LENGTH=675
Length=675
Score = 1053 bits (570), Expect = 0.0
Identities = 652/689 (95%), Gaps = 15/689 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGGGGCAGGTGTGCCGGACTTTTTCTACAGAGAAGCTCAACGTCTTGGCTATGTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGGGGCAGGTGTACCGGACTTTTTCTACAGAGAAGCTCAACGTCTTGGCTATGTT 60
Query 61 GCTCGCTCTGCTTTCAAGCTTCTACAGATTCAAAAACAGTACAAGCTCATCAAACCAGGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCGCTCAGCTTTCAAGCTTCTACAGATTCAAAAACAGTACAAGCTCATCAAACCAGGC 120
Query 121 TCCTCTGTTCTTGACCTAGGTTGCGCGCCTGGTGCTTGGCTTCAGGTTGCTTGCCAAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTCTGTTCTTGACCTAGGTTGCGCGCCTGGTGCTTGGCTTCAGGTTGCTTGCCAAAGC 180
Query 181 TTAGGTCCACTTAAAAGTGGTGGAATTGTCGTCGGTATGGATATAAAGAAGGTGAAGGTT 240
||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTAGGCCCACTTAGAAGTGGTGGAATTGTCGTTGGTATGGATATAAAGAAGGTGAAGGTT 240
Query 241 CCTCCACAGTGTGATTCTCGAGTGCAAACCATTGCCGCCGATGTTTTAAACTTTCCCAGA 300
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 CCTCCACAGTGTGATTCTCGAGTGCAAACCATTGCTGCTGATGTTTTAAACTTTCCCAGA 300
Query 301 CAAACGATTCGGGAGTTATCGCCTCAGCAATTGGGATTTTCAGTCATTCTTTCAGATATG 360
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAAAGATTCGGGAGTTATCACCTCAGCAATTGGGATTTTCAGTCATTCTTTCAGATATG 360
Query 361 TGTCACTCAGTATCTGGAATTACCACTAGAGATGCAGCTCTGTCTGCTGAATTGGGAATG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTCACTCAGTATCTGGAATAACCACTAGAGATGCAGCTCTGTCTGCTGAATTGGGAATG 420
Query 421 CGTGCACTTGATTTGGCTGTTGGTCAAGCTGCCATCTCTCAGTCACCTGGTGATGATAAT 480
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CGAGCACTTGATTTGGCTGTTGGTCAAGCTGCCATCTCTCAGTCACCTAATGATGAT--- 477
Query 481 GATGGAGGCGATGAGGTTCCAAGCAACGAAAGTCGTCGTGGTGTACTTAGGCATGGGGGT 540
||||||||| |||| | ||||||||||| |||||||||||||||||| ||
Sbjct 478 GATGGAGGC---------CCAA--A-CGAAAGTCGTCCTGGTGTACTTAGGCATGGTGGC 525
Query 541 CATCTTGTGATCAAGCTTTTAGAGAGCGAGGATGCTCAAGATTTTGCTCGAATTTGCAAG 600
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 526 CATCTTGTGATCAAGCTTCTAGAAAGCGAGGATGCTCAAGATTTTGCTCGAATTTGCAAG 585
Query 601 CCCATCTTTAGCAAGGCATCTTGGTTGAGGCCAAAAGCTACAAGATCATCATCTCGAGAA 660
|| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 586 CCTATCTTCAACAAGGCATCTTGGTTGAGGCCAAAAGCTACAAGACCATCATCTCGAGAA 645
Query 661 ATTTACTTGATTTGCCAGGGATTTCGATA 689
|||||||||||||||||||||||||||||
Sbjct 646 ATTTACTTGATTTGCCAGGGATTTCGATA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5