BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325866
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13940.1 | Symbols: | aminopeptidases | chr5:4490263-449558... 1448 0.0
> AT5G13940.1 | Symbols: | aminopeptidases | chr5:4490263-4495585
REVERSE LENGTH=2430
Length=2430
Score = 1448 bits (784), Expect = 0.0
Identities = 874/918 (95%), Gaps = 4/918 (0%)
Strand=Plus/Plus
Query 273 GATTGATATTAGAATTGAAACAGAGAAGGATAGTTTATACATTGAAAGAACCCGCATAGA 332
|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1515 GATTGATATTAGTATTGAAACAGAGAAGGATAGTTTATACATCGAAAGAATCCGCATAGA 1574
Query 333 GAAGCTCAAGCTCAGTCTCTCCAACTTGATGAAAAAGATAACAATCCAAGAGCCTACCTT 392
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1575 GAAGCTCAAGCTCAGTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTT 1634
Query 393 TGAGAGGATCATTGTAGTATACAGGAGAGTTTCAGGGAAGAAGGAAGCAGAAAGGAACAT 452
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1635 TGAGAGAATCATTGTAGTATACAGGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACAT 1694
Query 453 ATATGTGAAACACTTTAAGACCATTCCAATGGCTGATATGGAAATCGTGCTTCCAGAGAA 512
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1695 ATATGTGAAACACTTTAAGACCATTCCAATGGCTGATATGGAAATTGTGCTTCCAGAGAA 1754
Query 513 GAAAAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGG 572
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 GAAGAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGG 1814
Query 573 ACTGGTAACAGTGGTAAGTTCAGTGAGCCTC-AAAAAGACTGATATCAGAGTCATTGCAG 631
|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1815 ACTGGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAG-CTGATATCAGAGTCATTGCAG 1873
Query 632 CTATACTTAGCACGGTCGTGGCCTACTGCGTTAAAACATATTTCACGTTTCAGAGAAACT 691
| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1874 CCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACGTTTCAAAGAAACT 1933
Query 692 TGGTAGATTATCAGAGCCTTATCACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAA 751
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1934 TGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAA 1993
Query 752 GAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGGTTAAAGAGGTCATCA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 GAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGGTTAAAGAGGTCATCA 2053
Query 812 TTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCTACAAGCAAGGAAGAGCTTGACATGC 871
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2054 TTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCACAAGCAAGGAGGAGCTTGACATGA 2113
Query 872 AAAGTGAAGCATTCATCAAAAAAGAATTCAATGAAAGCTGCAATTTCGATGTAGATGATG 931
|||||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||
Sbjct 2114 AAAGTGAAGCATTCATCAAAGAAGAATTTAACGAAAGCTGCAATTTCGACGTGGATGATG 2173
Query 932 CTATCACGAAGCTTGAGAAGCTTGGACTTGTATCTCGTGATTCAGAAGACAAGTATAGAT 991
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 CTATCACAAAGCTTGAGAAGCTTGGACTTGTATCTCGTGATTCAGAAGACAAGTATAGAT 2233
Query 992 ACGTGGGTATGAAGGAAGCAAACGAGATAATGGGGACAACTACGGAAGAGATGGTACTCA 1051
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 GCGTGGAAATGAAGGAAGCAAACGAGATAATGGGGACAACTACGGAAGAGATGGTACTCA 2293
Query 1052 AGGCAAGAAAAGGTGGAGAATATGAAGACGAGGAAACAACAGAGA-ATGAGCCTCAATTG 1110
|||||||| ||||||||||||||||||||||||| ||||||| || | ||||||||| ||
Sbjct 2294 AGGCAAGACAAGGTGGAGAATATGAAGACGAGGATACAACAGCGACA-GAGCCTCAAATG 2352
Query 1111 AATCCTCAAGATGAACTTACCGCAAAGGAAGAACGTTTTCAATCTCGATATGACGAGTTT 1170
|||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct 2353 AATCCTCAAGATAAACTTACAGCAAAGGAGGAACGTTTTCAATCTCGGTATGATGAGTTT 2412
Query 1171 GAGTCCTTGTGGATGTAA 1188
||| ||||||||||||||
Sbjct 2413 GAGACCTTGTGGATGTAA 2430
Score = 390 bits (211), Expect = 1e-107
Identities = 264/287 (92%), Gaps = 14/287 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGCAACTTCAAAGTGATAACTAATGAAGAAATACAAGTAGCTCTCTCTGCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1177 ATGGAGAAGAGCAACTTCAAAGTGATAACTAATGAAGAAATACAAGTAGCCCTCTCTGCT 1236
Query 61 CAATATCGTCTCAATCTTCCTATTGTTGTTAATGAAGCTAAGCTTGATACAAAGTTGTTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CAATATCGTCTCAATCTTCCTATTGTTGTTAATGAAGCTAAGCTTGATACAAAGTTGTTA 1296
Query 121 ACAAGATTCTTCACCAAGTTTCCCCGGGATGATCTTCCTCGTTTCGCTGATAAG-A---- 175
||||||| |||| |||||||||| || ||||||||||||| ||||||||||||| |
Sbjct 1297 ACAAGATACTTCTCCAAGTTTCCGCGTGATGATCTTCCTCATTTCGCTGATAAGTATATA 1356
Query 176 -----C-G---TGGGTTTGGGATAGATCATATGAAAGCTTACTTCTTCCTAGCCAAAATA 226
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 ATATTCAGACGTGGGTTTGGGATAGATCATATGAAAGCTTACTTCTTCCTAGCCAAAATA 1416
Query 227 GATACAATCCTTGTCCGTATTTGGAACTTTCTTCTCACTATCACATG 273
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 1417 GATACAATCCTTGTCCGTATTTGGCACTTTCTACTCACCATCACATG 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5