BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325871
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14000.1 | Symbols: anac084, NAC084 | NAC domain containing ... 1003 0.0
> AT5G14000.1 | Symbols: anac084, NAC084 | NAC domain containing
protein 84 | chr5:4518008-4519300 FORWARD LENGTH=1056
Length=1056
Score = 1003 bits (543), Expect = 0.0
Identities = 595/621 (96%), Gaps = 0/621 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTGGAGAAGAGGATAGTAGTGAGTGGAGGCATGAAATTGCCAATAGGATACAGA 60
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 170 ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGA 229
Query 61 TTTCACCCAACGGAGCAAGAGCTTATCCTTCATTACTTGCTCCCAAAGGCCTTTGCTTCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGCTCCCAAAGGCCTTTGCTTCT 289
Query 121 CCTTTGCCTTCCTCCATCATCCCTGTCGTTGACCTCTTCTTCTCTCATCCTCTTACTTTC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 290 CCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTC 349
Query 181 CCAGGGGACCAAAAAGAGAAGCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCAGGGGACCAAAAGGAGAAGCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGT 409
Query 241 AATGAGCATAGAATCAAGATTTCATCTGGTGATGGTTATTGGAAACCTATTGGGAAAGAG 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 410 AATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAG 469
Query 301 AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAA 529
Query 361 ACAAACAAGTCTTCTTCTAATTGCAACAAAACCAAATGGAGCATGACAGAGTACTGCCTT 420
|||||||||||||||||| ||||||||||||| | |||||||||||||||||| || |||
Sbjct 530 ACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGAGCATGACAGAGTATTGTCTT 589
Query 421 GCGGGATTTGCATCGGCTAAGGTGTTTGGAGAATGGGCAGTGTACAATGTTTATGAGAGA 480
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 590 GCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGG 649
Query 481 AAAGGATCAAAAGGAAGAAAACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGT 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAAGGCTCAAAAGGAAGAAAACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGA 709
Query 541 TGCGTCCACCATTTTATGGTTGGGTCCGATCATGAAACCGGTCCGCCACCGCCTTCTCCT 600
||| || ||||||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 710 TGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCT 769
Query 601 CCTACCTCACCTGATGAGTAA 621
||||||||| |||||||||||
Sbjct 770 CCTACCTCAGCTGATGAGTAA 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5