BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325890
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14180.1 | Symbols: MPL1 | Myzus persicae-induced lipase 1 |... 2002 0.0
> AT5G14180.1 | Symbols: MPL1 | Myzus persicae-induced lipase 1
| chr5:4571337-4574462 REVERSE LENGTH=1411
Length=1411
Score = 2002 bits (1084), Expect = 0.0
Identities = 1205/1263 (95%), Gaps = 9/1263 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGGTTCGGTTATGGTTCCGTCCGTTTCAATCGGTTTAGCCTTATGTGTCATAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 50 ATGGCCGGTTCGGTTATGGTTCCGTCCGTTTCAATCGGTTTAGCCTTATCTGTCTTAATC 109
Query 61 TTCTTTGCTCTTGCACTTAAGCCCCTCGAAGCTCGTGGAACCTTCGGCAGGCTTGCCGGA 120
||||| |||||| | || ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 110 TTCTTCGCTCTTTCCCTCAAGACCCTTGAAGCTCGTGGAACCTTCGGCAGGCTTGCCGGA 169
Query 121 AAGCCACCGCAGAGGACTGCTTCCGGCGGCATATGTGCTTCTTCTGTTCACATATATGGT 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 170 CAGCCACCGCAGAGGACTGCTGCCGGCGGCATATGCGCTTCTTCTGTTCACATATTTGGT 229
Query 181 TACAAGTGCGAAGAACATGATGTGGTGACTCAAGATGGGTACATATTGAATATGCAAAGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TACAAGTGCGAAGAACATGATGTGGTGACTCAAGATGGGTACATATTGAATATGCAAAGG 289
Query 241 ATACCGGAAGGACGAACCGGCA-CCGGT-GCCGGTGATGGTGGAAAGAGACAACCTGTCC 298
||||||||||||||| |||| | || || ||||| ||||| |||||||||||||||||||
Sbjct 290 ATACCGGAAGGACGAGCCGG-AGCC-GTCGCCGGAGATGGGGGAAAGAGACAACCTGTCC 347
Query 299 TAATACAACATGGAATTCTTGTCGATGGGATGTCATGGCTGTTGAATCCAGCGGATCAAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TAATACAACATGGAATTCTTGTCGATGGGATGTCATGGCTGTTGAATCCAGCGGATCAAA 407
Query 359 ATCTGCCGTTGATTTTGGCGGATCAAGGATTCGATGTGTGGATGGGGAACACAAGAGGGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATCTGCCGTTGATTTTGGCGGATCAAGGATTCGATGTGTGGATGGGGAACACAAGAGGGA 467
Query 419 CGAGATTCAGCAGAAGACACAAGTACCTTGACCCTTCTCAACGGGCTTTCTGGAACTGGT 478
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 CTAGATTCAGCAGAAGACACAAGTACCTTAACCCTTCTCAACGGGCTTTCTGGAACTGGA 527
Query 479 CGTGGGACGAGCTTGTGAGTTACGATCTGCCTGCTATGTTTGACCATATCCACGGCCTAA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 528 CGTGGGACGAGCTTGTGAGTTACGATCTGCCTGCTATGTTTGACCATATCCATGGCCTAA 587
Query 539 CAGGCCAAAAGATCCACTACCTCGGACACTCTTTGGGGACGTTAATAGGATTTGCGTCGT 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 588 CAGGCCAAAAGATTCACTACCTCGGACACTCTTTGGGGACGTTAATAGGATTTGCTTCGT 647
Query 599 TCTCGGAAAAAGGGTTGGTGGATAAAGTGAGATCGGCGGCGATGTTGAGTCCCGTTGCTT 658
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 648 TCTCAGAAAAAGGGTTGGTGGATCAAGTGAGATCGGCGGCGATGTTGAGTCCCGTTGCTT 707
Query 659 ATCTCAGCCACATGACCACCGTCATCGGCGATATCGCCGCCAAATCCTTCCTGGCCGAGG 718
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 708 ATCTCAGCCACATGACCACCGTCATCGGCGATATCGCCGCAAAAACCTTCCTCGCCGAGG 767
Query 719 CCACGTCCATTCTTGGATGGGCAGAGTTTAACCCCAAAAGCAGTGGATTAGTAGGGGGAT 778
|||| || |||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 768 CCACCTCTATTCTTGGATGGCCAGAGTTTAACCCGAAAAG---TGGATTAGTAGGGG-AT 823
Query 779 TT-ATAAAGGCTATATGCCTTAAAGCGGGGATCGACTGTTATGATTTACTCTCCGTTATC 837
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 824 TTTATAAAGGCTATATGCCTTAAAGCGGGGATCGACTGTTATGATTTAGTCTCTGTTATC 883
Query 838 ACCGGAAAGAATTGTTGCCTTAACGCCTCAACCATTGATCTGTTCCTTGCGAACGAACCT 897
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 884 ACTGGAAAGAATTGCTGCCTTAACGCATCAACCATTGATCTGTTCCTTGCCAACGAACCT 943
Query 898 CAATCTACTTCCACCAAGAACATGATCCACCTTGCTCAAACGGTAAGAGTCAAGGAGTTG 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 944 CAATCTACTTCCACCAAGAACATGATCCACCTTGCTCAAACGGTAAGAGACAAGGAGTTG 1003
Query 958 AGAAAATACAACTATGGAAGTAGTGATCACAACATAAAATACTACGGTCAAGCGATACCA 1017
|||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 1004 AGAAAATACAACTATGGAAGCAGTGATCGCAACATAAAACATTACGGTCAAGCGATACCA 1063
Query 1018 CCGGCTTACAACATATCGGCGATCCCACACGACCTTCCGCtttttttCAGCTACGGCGGT 1077
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1064 CCGGCATACAACATATCGGCGATCCCACACGAGCTTCCGCTTTTTTTCAGCTACGGTGGT 1123
Query 1078 TTAGATAGCCTGGCCGATGTGAAAGATGTCGAGTTTCTCCTTGACCAGTTTAAGTATCAC 1137
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1124 TTAGATAGCCTGGCTGATGTGAAAGACGTTGAGTTTCTCCTTGACCAGTTTAAGTATCAC 1183
Query 1138 GACATCGATAAGATGAATGTGCAGTTTGTGAATGACTATGCACATGCTGATTTCATCATG 1197
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1184 GACATCGATAAGATGAATGTGCAGTTTGTGAAAGACTATGCTCATGCTGATTTCATCATG 1243
Query 1198 GGTGTTACTGCCAAAGACGTTGTTTATAACCAAGTTGCTACCTTTTTCAAACGACAAGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GGTGTTACTGCCAAAGACGTTGTTTATAACCAAGTTGCTACCTTTTTCAAACGACAAGCT 1303
Query 1258 TGA 1260
|||
Sbjct 1304 TGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5