BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325917
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14470.1 | Symbols: | GHMP kinase family protein | chr5:466... 1746 0.0
AT3G01640.1 | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr... 922 0.0
> AT5G14470.1 | Symbols: | GHMP kinase family protein | chr5:4662803-4664657
REVERSE LENGTH=1327
Length=1327
Score = 1746 bits (945), Expect = 0.0
Identities = 1050/1102 (95%), Gaps = 2/1102 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCGAATCCGAAACCGGCGATTTCAGGCAATGATAA-GGCCGTGTTCGAGCATCG 59
|||||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 1 ATGGATCCGAATCCTAAACCGGCGATTTCTGGCAAAGATAATGG-CGTGTTCGAGCATCG 59
Query 60 TTCGTTCGCTAGAATCGGGTTTCTGGGAAACCCTAGCGACGTTTACTTCGGTCGTACGAT 119
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 60 CTCGTTTGCTAGAATCGGGTTTCTTGGAAACCCTAGCGATGTTTACTTCGGTCGTACGAT 119
Query 120 TTCATTTACCATTGGTAATTTCTGGGCTTGGGCTAAGCTCGAACCATCCGATCATCTTTT 179
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 120 TTCATTTACCATTGGTAATTTCTGGGCGTGGGCTAAGCTCGAACCATCTGATCATCTCTT 179
Query 180 GATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGATTCTCTCGACAATCTCGTTTA 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGATTCTCTCGATAATCTCGTTTA 239
Query 240 TCGATTGGAAAATGATGGATACTACGGAGGTGTAAGGTTGCTAATGGCGATTTGCAAAGT 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 TCGATTGGAAAATGATGGATACTATGGAGGTGTAAGGTTACTAATGGCGATTTGCAAAGT 299
Query 300 ATTCCGCAACTATTGCAAAGATAATGGCATACAACTTCATGaaaaaaaCTTCTCTCTTTC 359
|||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |||||||
Sbjct 300 ATTCCGAAACTATTGCAAAGAAAATGGTATACAACTTCATGACAAAAACTTCACTCTTTC 359
Query 360 TTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCATTGTATCTGC 419
|||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||||
Sbjct 360 TTATGATACCAATATCCCAAGACAGACGGGGCTTTCAGGTTCTAGTGCAATTGTATCTGC 419
Query 420 TGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAATCGAAGTCCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAATCGAAGTCCG 479
Query 480 ACCTAACCTTATTCTCAATGCGGAGAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACCG 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACCTAACCTTATTCTTAATGCGGAGAAAGAACTTGGTATTGTTGCTGGTCTTCAAGACCG 539
Query 540 TGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAAAGAACATATGGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAAAGAGCATATGGA 599
Query 600 TAAAGTTGGATATGGGATATACACTATAATGGATATCAATCTTCTTCCTCCTCTGCATCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAAGTTGGATATGGGATATACACTATAATGGATATCAATCTTCTTCCTCCTCTGCATCT 659
Query 660 AATCTATGCTGAGAATCCAAGTGACTCTGGCAAGGTACATAGCACGGTTCGTAGAAGGTG 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CATCTATGCTGAGAATCCTAGTGACTCTGGCAAGGTACATAGCACGGTTCGTAGAAGGTG 719
Query 720 GTTAGATGGTGATGAGTTCATAATATCATCAATGGCAGAAATTGCAAAATTAGCTGAAGA 779
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTAGACGGTGATGAGTTTATAATATCATCAATGGCAGAAATTGCAAAATTAGCTGAAGA 779
Query 780 AGGTCGAACTGCATTACTTAAAAAAGATTACTCCAAACTCAAGGAACTCATGAACCGTAA 839
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 780 AGGTCGAACTGCATTGCTTAAGAAAGATTACTCCAACCTCAAGGAACTCATGAACCGTAA 839
Query 840 CTTCGATCTTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGAGCTATGAACATAGAAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 CTTCGATCTTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGAGCTATGAACATAGAGAT 899
Query 900 GGTGGAAGTGGCTCGTAAGATCGGAGCAGCTGCAAAGTTCACTGGAAGCGGAGGGGCTGT 959
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 900 GGTGGAAGTGGCACGTAAGATCGGCGCAGCTGCAAAGTTCACTGGAAGCGGAGGAGCTGT 959
Query 960 GGTTGTTTTCTGCCCCGATGGACCATCTCAGGTCAAACTCCTCGAAGAAGAATGTCGAAA 1019
||| ||||||||||| || || ||||||||||||||||| || |||||||||||||| ||
Sbjct 960 GGTGGTTTTCTGCCCTGAGGGGCCATCTCAGGTCAAACTTCTAGAAGAAGAATGTCGGAA 1019
Query 1020 ATCTGGATTTATAGTTGAGCCAGTAAAGCTTGTGCCTACACGCCTCAATAATTCTGATCT 1079
|||||||||||| |||||||||||||||||||||||||| ||||||| || ||||||| |
Sbjct 1020 ATCTGGATTTATCGTTGAGCCAGTAAAGCTTGTGCCTACCCGCCTCAGTAGTTCTGATAT 1079
Query 1080 TAAGACTTTATCAAAACCATGA 1101
|||||| ||||||||| |||||
Sbjct 1080 TAAGACATTATCAAAAACATGA 1101
> AT3G01640.1 | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239381-241443
FORWARD LENGTH=1371
Length=1371
Score = 922 bits (499), Expect = 0.0
Identities = 880/1063 (83%), Gaps = 29/1063 (3%)
Strand=Plus/Plus
Query 52 GAGCATCGTTCGTTCGCTAGAATCGGGTTTCTGGGAAACCCTAGCGACGTTTACTTCGGT 111
|||||||| || |||||| | ||||| ||||| |||||||| ||||| || ||||||||
Sbjct 89 GAGCATCGGTCCTTCGCTCGGATCGGATTTCTCGGAAACCCGAGCGATGTATACTTCGGG 148
Query 112 CGTACGATTTCATTTACCATTGGTAATTTCTGGGCTTGGGCT-AAGCTCGAACCATCCGA 170
|| || || ||||| ||||| || || |||||||| | | | ||||| || ||||| ||
Sbjct 149 CGAACCATATCATTGACCATCGGAAACTTCTGGGCATCCG-TGAAGCTGGAGCCATCGGA 207
Query 171 TCATCTTTTGATCAAACCTCATCCATTCCATGATCTTGTCCAGTTCGA-TTCTCTCGACA 229
||||| | ||||| |||||||||||||||||||| ||||||||| | |||||||||
Sbjct 208 GCATCTCGTAATCAAGCCTCATCCATTCCATGATCTCGTCCAGTTC-ACCTCTCTCGACC 266
Query 230 ATCTCGTTTATCGATTGGAAAATGATGGATACTACGGAGGTGTAAGGTTGCTAATGGCGA 289
||||| | |||| ||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 267 ATCTCCTGAATCGTTTGCAAAATGAAGGATACTACGGTGGGGTAAGGTTGCTAATGGCGA 326
Query 290 TTTGCAAAGTATTCCGCAACTATTGCAAAGATAATGGCATACAACTTCATGaaaaaaaCT 349
| || ||||||||||| |||||||||||||| |||| ||| |||||||| || ||||
Sbjct 327 TATGTAAAGTATTCCGTAACTATTGCAAAGAGAATGACATTCAACTTCACCAAGCCAACT 386
Query 350 TCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCTCTCTTTCTTATGATACCAATATCCCTAGGCAGACAGGGCTTTCGGGTTCTAGTGCCA 446
Query 410 TTGTATCTGCTGCTCTTAGCTGCCTTCTCGACTTCTACAATGTCAGGCAATCAATCAGAA 469
| ||||| ||||| |||| |||||||||||||||||||||||||||||| | |||| ||
Sbjct 447 TCGTATCCGCTGCCCTTAACTGCCTTCTCGACTTCTACAATGTCAGGCATTTGATCA-AA 505
Query 470 -T-CGAAGTCCGACCTAACCTTATTCTCAATGCGGAGAAAGAACTTGGTATTGTTGCTGG 527
| | ||||||| |||||| || |||||| ||| |||||||||||||| |||||||||||
Sbjct 506 GTAC-AAGTCCGCCCTAACATTGTTCTCAGTGCTGAGAAAGAACTTGGCATTGTTGCTGG 564
Query 528 TCTTCAAGACCGTGTTGCTCAAGTCTATGGTGGTGGTCTTGTTCACATGGATTTTAGTAA 587
|||||| ||| | |||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct 565 TCTTCAGGACAGGGTTGCTCAGGTCTATGGTGGT---CTTGTTCACATGGATTTTAGCAA 621
Query 588 AGAACATATGGATAAAGTTGGAT-ATGGGATATACACTA-TAATGGATATCAATCTTCTT 645
|| || ||||||||| |||| ||||||| |||||| || ||||||||| ||| ||
Sbjct 622 GGAGCACATGGATAAA-TTGGGGCATGGGATTTACACTCCTA-TGGATATCAGTCTCCTC 679
Query 646 CCTCCTCTGCATCTAATCTATGCTGAGAATCCAAGTGACTCTGGCAAGGTACATAGCACG 705
|||||||||||||| ||||||||||||||||| || ||||| || ||||||||||| | |
Sbjct 680 CCTCCTCTGCATCTCATCTATGCTGAGAATCCGAGCGACTCAGGGAAGGTACATAGTATG 739
Query 706 GTTCGT-AGAAGGTGGTTAGATGGTGATGAGTTCATAATATCATCAATGGCAGAAATTGC 764
||||| | ||| |||||||| ||||||||||| ||||| ||||||||| |||| | |
Sbjct 740 GTTCGGCA-AAGATGGTTAGACGGTGATGAGTTTATAATCTCATCAATGAAAGAAGTCGG 798
Query 765 AAAAT-TAGCTGAAGAAGGTCGAACTGCATTACTTAAAAAAGATTACTCCAAACTCAAGG 823
|| | |||| ||||||||||||||||||||||| || || || | |||||||| ||
Sbjct 799 AAG-TCTAGCAGAAGAAGGTCGAACTGCATTACTCAACAAGGACCATTCCAAACTTGTGG 857
Query 824 AACTCATGAACCGTAACTTCGATC-TTCGAAGGAGTATGTTTGGAGATGAATGTTTGGGA 882
|||||||||||| ||| ||||| | |||| ||| | |||||||| |||||||| || |||
Sbjct 858 AACTCATGAACCTTAATTTCGA-CATTCGGAGGCGGATGTTTGGGGATGAATGCTTAGGA 916
Query 883 GCTATGAACATAGAAATGGTGGAAGTGGCTCGTAAGATCGGAGCAGC-TGCAAAGTTCAC 941
|| ||||||||||| ||||||||||| || | | | | || ||||| | ||||||||||
Sbjct 917 GCAATGAACATAGAGATGGTGGAAGTAGCAAGGAGGGTTGGTGCAGCCT-CAAAGTTCAC 975
Query 942 TGGAAGCGGAGGGGCTGTGGTTGTTTTCTGCCCCGATGGACCATCTCAGGTCAAACTCCT 1001
|||||| ||||| || ||||| ||||||||||| || || ||||||||||| ||||| ||
Sbjct 976 TGGAAGTGGAGGAGCAGTGGTGGTTTTCTGCCCTGAAGGTCCATCTCAGGTGAAACTTCT 1035
Query 1002 CGAAGAAGAATGTC-GAAAATCTGGATTTATAG-TTGAGCCAGTAAAGCTTGTGCCTACA 1059
||||||||||| | | ||| | ||||||| | || |||| ||||| ||| |||| ||
Sbjct 1036 GGAAGAAGAATG-CAGGAAAGCGGGATTTAC-GCTTCAGCCGGTAAAAATTGCGCCTTCA 1093
Query 1060 CGCCTCAATAATTCTGATC-TTAAGACTTTATCAAAACCATGA 1101
| | ||| ||||||| | || |||| |||| ||| || |||
Sbjct 1094 TGTTTGAATGATTCTGA-CATTCAGACCTTATGAAAGCCTTGA 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5