BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325922
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14520.1 | Symbols: | pescadillo-related | chr5:4680696-468... 2691 0.0
> AT5G14520.1 | Symbols: | pescadillo-related | chr5:4680696-4684404
REVERSE LENGTH=1940
Length=1940
Score = 2691 bits (1457), Expect = 0.0
Identities = 1666/1768 (94%), Gaps = 9/1768 (1%)
Strand=Plus/Plus
Query 1 ATGCCGAAGCATTATAGGCCAGCGGGAAAAAAGAAGGAAGGAAATGCGGCTAGGTATATG 60
|||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 75 ATGCCGAAGCATTACAGACCAACGGGGAAAAAGAAGGAAGGAAATGCGGCTAGGTATATG 134
Query 61 ACCAGGTCGCAAGCTCTCAAACATCTTCAAGTTAATTTGAATCTATTCAGGAGACTATGT 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 135 ACCAGGTCGCAAGCTCTTAAACATCTTCAAGTTAACTTGAATCTATTCAGGAGACTATGT 194
Query 121 ATTGTCAAAGGTATATTTCCCCGAGAACCCAAGAAGAAGGTGAAGGGAAACCATCACACT 180
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 195 ATTGTCAAAGGTATATTTCCCCGAGAACCAAAGAAGAAGATTAAGGGAAACCATCACACT 254
Query 181 TACTACCATGTCAAGGACATTGCTTTCCTCATGCACGAGCCACTTCTTGAGAAGTTCAGG 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 255 TACTACCATGTCAAGGACATTGCTTTCCTCATGCACGAGCCTCTTCTTGAGAAGTTTAGG 314
Query 241 GAAATCAAAACATATCAAAAGAAGGTCAAAAAAGCCAAGGCTAAGAAAAACGAGGAGCTC 300
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 315 GAAATCAAAACATACCAAAAGAAGGTCAAAAAAGCCAAGGCCAAGAAAAACGAGGAGCTT 374
Query 301 GCACGCCTTTTGCTTACTCGCCAACCCACTTACAAGCTAGATAGATTGATCCGTGAAAGG 360
||||||||| |||| || |||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 375 GCACGCCTTCTGCTCACCCGCCAACCTACTTACAAGCTTGATAGATTGATCCGTGAGAGG 434
Query 361 TATCCAACATTTATTGATGCACTACGAGACTTGGATGACTGTCTTACGATGGTTCATCTT 420
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 435 TATCCAACATTTATTGATGCACTGCGAGACTTGGATGACTGTCTCACTATGGTTCATCTT 494
Query 421 TTTGCGGTGTTACCTGCATCAGACAGGGAAAATCTTGAAGTTAAGAGAGTCCACAACTGT 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 TTTGCGGTGTTACCTGCATCAGACAGGGAAAATCTTGAAGTTAAGCGAGTCCACAACTGT 554
Query 481 AGAAGATTGACCCATGAATGGCAAGCATACATTTCACGTTGTCATGCATTACGTAAAGTG 540
||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct 555 CGAAGATTGACCCATGAATGGCAAGCTTACATTTCACGTTCTCATGCGTTACGTAAAGTG 614
Query 541 TTTGTGTCTGTCAAGGGTATTTACTATCAGGCTGAATTAGAAGGTCAAAAGATCACTTGG 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 TTTGTGTCTGTCAAGGGTATTTACTATCAGGCTGAAATAGAAGGTCAAAAGATCACTTGG 674
Query 601 TTGACCCCTCATGCAATTCAACAAGTTTTTACAAATGATGTTGACTTTGGTGTCCTGCTT 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TTGACCCCTCATGCAATCCAACAAGTTTTTACAAATGATGTTGACTTTGGTGTCCTGCTT 734
Query 661 ACCTTCTTGGAATTTTATGAGACTCTCCTTGCCTTTATTAACTTCAAACTTTACCATTCT 720
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 735 ACCTTCTTGGAATTTTACGAGACTCTTCTTGCCTTTATTAACTTCAAGCTTTACCATTCT 794
Query 721 CTGAATGTGAAATATCCGCCAATCCTTGATTCTCGGTTGGAGGCTTTGGCTGCAGATCTC 780
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 CTGAATGTTAAATACCCGCCAATCCTTGACTCTCGGTTGGAGGCTTTGGCTGCAGATCTC 854
Query 781 TATGCACTGTCAAGATACATAGATGCCAGCTCCAGAGGCATGGCGGTGGAACCTAAGGTT 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 855 TATGCACTGTCTAGATACATAGATGCCAGCTCCAGAGGCATGGCGGTGGAACCCAAAGTT 914
Query 841 GAAGCTTCATCTAGCTCACAGTCAAATGACCGTGAAGAGTCTGAACTGAGACTTGCACAA 900
|| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 915 GATGCTTCATTTAGCTCACAGTCAAATGACCGTGAAGAGTCTGAACTTAGACTTGCACAG 974
Query 901 CTTCAGCACCAGCTGCCTTCGAGTGAGCCTGGAGCATTGATGCATCTTGTTGCAGATAAC 960
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 975 CTTCAGCACCAGCTGCCTTCAAGTGAGCCTGGAGCATTGATGCATCTGGTTGCAGATAAC 1034
Query 961 AATAAAGAGGTTGAAGAGGATGAAGAAACAAGAGTGTGCAAGTCACTCTTCAAGGATCTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AATAAAGAGGTTGAAGAGGATGAAGAAACAAGAGTGTGCAAGTCACTCTTCAAGGATCTG 1094
Query 1021 AAGTTTTTCTTGAGCCGTGAGGTTCCGAGAGAGTCCCTGCTTTTTGTGCTTCCTGCTTTT 1080
|||||||||||||||||||||||||| ||||||||||||| || ||| || ||||||||
Sbjct 1095 AAGTTTTTCTTGAGCCGTGAGGTTCCAAGAGAGTCCCTGCAATTGGTGATTACTGCTTTT 1154
Query 1081 GGTGGGATGGTGTCTTGGGAAGGAGAAGGTGCACCATTCAAGGAGGATGATGAGAGTATT 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1155 GGTGGGATGGTGTCTTGGGAAGGAGAAGGTGCACCTTTCAAGGAGGATGATGAGAGTATT 1214
Query 1141 ACACATCATATCATCGATAAGCCAAGCGCAGGCCATGTGTATCTTTCAAGGGTGTATGTG 1200
||||||||||||||||||||||||||||| |||||| |||| ||||| ||||| ||||||
Sbjct 1215 ACACATCATATCATCGATAAGCCAAGCGCTGGCCATTTGTACCTTTCTAGGGTATATGTG 1274
Query 1201 CAACCACAGTGGATCTATGACTGTGTGAATGCTCGCATAATCTTGCCGACTGAAAAGTAC 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1275 CAACCACAGTGGATCTATGACTGTGTGAATGCTCGCATAATCTTGCCAACTGAAAAGTAC 1334
Query 1261 TTGGTTGGAAGCAGAATTCCACCGCCACACTTGTCACCATTTGTGGACAATGAAGCAGAA 1320
||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TTGGTCGGAAG-A-A-TTCCACCGCCACACTTGTCACCATTTGTGGACAATGAAGCAGAA 1391
Query 1321 GGATATGTTCCTGATTATGCTGAAACCATCAAAAGACTACAAGCAGCAGCCAGAAACGAA 1380
||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1392 GGATACGTTCCTGATTATGCCGAAACCATCAAAAGACTACAGGCAGCAGCAAGAAACGAA 1451
Query 1381 GTTCTTCCGTTGCCAGGTGTTGGGAAAGAGGATCTTGAAGATCCTCAAAACTTATTGTAC 1440
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1452 GTGCTTCCATTGCCAGGTGTTGGGAAAGAGGATCTTGAAGATCCTCAAAATTTATTGTAC 1511
Query 1441 GCTGGTGTTATGAGTCGTGCTGAGGAAGCCGAAGCTGCAAAGAACAAGAAGAAGATGGCG 1500
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1512 GCTGGTGTTATGAGTCGTGCGGAGGAAGCCGAAGCTGCAAAGAACAAGAAGAAGATGGCG 1571
Query 1501 GCGCAGGAGAAACAATACCATGAGGAACTGAAGATGGAAATAACTGCAAGTAAGGATGTT 1560
||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1572 GCGCAGGAGAAGCAATACCATGAGGAACTGAAGATGGAAATAAATGGAAGTAAGGATGTT 1631
Query 1561 GTAGCACCTGTGGTGACTGAAG---A---TGAAGAATCAGTTCCTGATGCTATGCAAATA 1614
||||| |||||| || |||||| | ||||||||||||||| |||||||||||||||
Sbjct 1632 GTAGCGCCTGTGTTGGCTGAAGGTGAGGGTGAAGAATCAGTTCCGGATGCTATGCAAATA 1691
Query 1615 GCTCAAGAGAATGCTGATATGAACACAGTGCTGATGTCCCGTAAGAAGAGGAAGCTCTAC 1674
||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 1692 GCTCAAGAGGACGCTGATATGCCCAAAGTGTTGATGTCCCGTAAGAAGAGGAAGCTCTAC 1751
Query 1675 GAAGCCATGAAGATTGGGCAGAAAAAGAAGAAAGCAAGTGTTGAACTAATCGAGCAGCGC 1734
|| |||||||||||| |||| || ||||| | || |||||||| ||||||||||||||
Sbjct 1752 GATGCCATGAAGATTTCGCAGTCAAGGAAGAGATCAGGTGTTGAAATAATCGAGCAGCGC 1811
Query 1735 AAGAAAAAGTTGAATGATGCTCAATCAT 1762
||||||| |||||||||| ||||| |||
Sbjct 1812 AAGAAAAGGTTGAATGATACTCAACCAT 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5