BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325929
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14600.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1404 0.0
AT5G14602.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 311 1e-83
AT5G18150.1 | Symbols: | Methyltransferase-related protein | c... 100 2e-20
> AT5G14600.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:4706945-4709143
FORWARD LENGTH=1241
Length=1241
Score = 1404 bits (760), Expect = 0.0
Identities = 870/922 (94%), Gaps = 12/922 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCCAACTGAGTCAAAGAAAGCCTTATCTTTCAAAAGGTGTATTGAAGATGGCGAC 60
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 164 ATGTTACCAACTGAGTCAAAGAAAGCCTTTTCATTCAAAAGGTGTATTGAAGATGGGGAC 223
Query 61 TTAGTTATCGTTTACGAAAGACATGATGTGATGAAACCAGTGAAAGTAAGCAAAGACGCT 120
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 224 TTAGTTATTGTTTACGAAAGACATGATGTGATGAAACCAGTTAAAGTAAGTAAAGACGGT 283
Query 121 GTGCTTCAGAACCGTTTTGGTGTGTATAAACACTCGGATTGGATTGGGAAGCCATTAGGG 180
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 284 GTGCTTCAGAACCGTTTTGGTGTGTATAAGCACTCGGATTGGATTGGGAAACCATTAGGG 343
Query 181 ACTAAAGTATTCAGCAACAAGGGTAAATTTGTATACCTCTTGGCTCCTACTCCTGAGCTA 240
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 344 ACGAAAGTATTCAGCAACAAGGGTAAATTTGTGTACCTGTTGGCTCCTACTCCTGAACTA 403
Query 241 TGGACACTGGTTTTAAGCCACAGGACTCAGATTCTTTACATTGCGGATATTAGCTTTGTG 300
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 404 TGGACATTGGTTTTAAGCCACAGGACTCAAATTCTTTACATTGCGGATATTAGCTTTGTG 463
Query 301 GTTATGTATCTAGAAGTCGTGCCTGGCTGTGTTGTTCTTGAGTCAGGCACAGGAAGTGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 464 GTTATGTATCTAGAAGTCGTGCCTGGCTGTGTTGTTCTTGAGTCAGGCACAGGTAGTGGT 523
Query 361 TCGCTTTCAACGTCACTTGCTCGAGCTGTGGCTCCAACTGGACATGTTTATTCATTTGAT 420
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 524 TCGCTTTCGACCTCACTTGCTCGAGCTGTGGCTCCAACTGGACACGTTTATTCATTTGAT 583
Query 421 TTCCATGAGCAACGAGCTGTCTCTGCAAGGGAAGATTTTGAGAAGACTGGAATTAGTAGT 480
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 584 TTCCATGAGCAGCGAGCTGTCTCTGCAAGGGAAGATTTTGAGAAGACGGGCATAAGTAGT 643
Query 481 TTAGTAACTGTAGAGGTTAGAGATATTCAAGGAGAAGGTTTTCCTGAGAAACTGTCAGGT 540
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 644 TTAGTAACCGTAGAGGTTAGAGACATTCAAGGAGAGGGTTTTCCTGAGAAACTGTCAGGT 703
Query 541 TTGGCTGATTCTGTGTTTCTAGACCTTCCACAGCCTTGGCTCGCAGTTCCTTCTGCAGCA 600
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 704 TTGGCTGATTCTGTGTTTCTAGACCTTCCACAGCCTTGGCTTGCGGTTCCTTCTGCAGCA 763
Query 601 AAAATGTTAAAGCAGGATGGAGTTCTATGCTCTTTCTCACCTTGCATCGAGCAAGTACAA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 AAGATGTTAAAGCAGGATGGAGTTCTATGCTCTTTCTCACCTTGCATCGAGCAAGTACAA 823
Query 661 CGGACTTGTGAAGTCCTCAGATCAGATTTCATAGGCAAGTTTTCAGAGATAAGAACGTTC 720
|||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 824 CGGACTTGTGAAGTCCTCAGATCAGATTTCAT-------T-----GAGATAAGAACGTTT 871
Query 721 GAGGTGCTTCTCAGAACATATGAAGTGAAGGAAGTGAAAATGGACACCAGTAGCATGGTT 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 872 GAGGTGCTTCTCAGAACATATGAAGTGAAGGAAGTGAAAATGGATACCAGTAGCATGGTT 931
Query 781 GGTGAGAGCCACGAGGAGGACAATGAAGGAATGAGACCTTGCAAGAGAAAACACCGTTCA 840
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 932 GGTGAGAGCCACGAGGAGGACAATGAAGGAATGAGGCCTTGCAAGAGAAAGCACCGTTCA 991
Query 841 AACGAAGACGTCACCGTTTCACAGGACAACTCTTCTAATGCAACTTCAGTCGTCATGGCT 900
|||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 992 AACGAAAACGACACTGTTTCACAGGACAACTCTTCTAATGCTTCTTCAGTCGTCATGGCT 1051
Query 901 CGGCCTTGTAGCGAAGCAAGAG 922
||||||||||| ||||||||||
Sbjct 1052 CGGCCTTGTAGTGAAGCAAGAG 1073
> AT5G14602.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:4709436-4709871 FORWARD LENGTH=436
Length=436
Score = 311 bits (168), Expect = 1e-83
Identities = 195/208 (94%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 922 GCGGTACTCGCGGGATATATCGCGTGGAGGACGGTGAATTCAACGCCGGCACTTTTCTCA 981
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 37 GCGGTACTCGCAGGATATATCGCGTGGAGGACGGTGAATTCTACGCCGGAACTATTCTCA 96
Query 982 GACGAGTCATTACCAGCCGAAGCCAAGGATAAACAAGGATTCGATTACAAGAGAAAGATG 1041
||||||| ||||| ||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 97 GACGAGTTATTACAAGCCGAAGCCAAGGAAAAACAAGGACTCGATTTCAAGAGAAAGATG 156
Query 1042 GATGATGGGTTATGGACGTTCGTTGATATGGCTAGCGGAAGATACCTTTGGAGAAATCTC 1101
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GATAATGGGTTATGGACGTTCGTTGATATGGCTAGCGGAAGATACCTTTGGAGAAATCTC 216
Query 1102 AAGGAGATGCGTGAGA-ATAGTCAATGA 1128
|||||||||||| ||| | |||||||||
Sbjct 217 AAGGAGATGCGTCAGAGA-AGTCAATGA 243
> AT5G18150.1 | Symbols: | Methyltransferase-related protein |
chr5:6000014-6000331 REVERSE LENGTH=231
Length=231
Score = 100 bits (54), Expect = 2e-20
Identities = 82/95 (86%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 1036 AAGATGGATG-ATGGGTTATGGACGTTCGTTGATATGGCTAGCGGAAGATACCTTTGGAG 1094
|||||||| | ||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 139 AAGATGGA-GAATGGGTTTTGGGTGTTCGTCGATATGGCTAGCGGAAGATACCTTTGGAG 197
Query 1095 AAATCTCAAGGAGATGCGTGAGAA-TAGTCAATGA 1128
||||||||||| ||| | ||||| | |||||||
Sbjct 198 GAATCTCAAGGAAATGAGAGAGAAATC-TCAATGA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5