BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325935
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14670.1 | Symbols: ATARFA1B, ARFA1B | ADP-ribosylation fact... 900 0.0
AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding ... 536 8e-152
> AT5G14670.1 | Symbols: ATARFA1B, ARFA1B | ADP-ribosylation factor
A1B | chr5:4729319-4730495 FORWARD LENGTH=567
Length=567
Score = 900 bits (487), Expect = 0.0
Identities = 530/551 (96%), Gaps = 2/551 (0%)
Strand=Plus/Plus
Query 1 ATGGGGCTTAATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCTTAATTTCACAAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATT 60
Query 61 CTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTATTCTC-TACAAGCTGAAGCTTGG 119
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 61 CTGATGGTAGGTCTTGATGCTGCTGGTAAGACCACTAT-CTTGTATAAGCTGAAGCTTGG 119
Query 120 CGAAATCGTCACTACCATTCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAAATCGTCACTACCATCCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAA 179
Query 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCCTGTGGAGGCA 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CATCAGCTTCACTGTTTGGGATGTGGGGGGTCAGGACAAGATTCGTCCCTTGTGGAGGCA 239
Query 240 CTACTTCCAGAACACACAAGGTCTTATCTTTGTGGTTGATAGCAACGACAGGGACCGAGT 299
||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 CTATTTCCAAAACACTCAAGGTCTTATATTCGTGGTTGATAGCAACGACAGGGACCGAGT 299
Query 300 TGTGGAGGCGAGAGATGAATTACATCGCATGTTAAATGAGGATGAACTGAGGGATGCTGT 359
|||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGTGGAAGCGAGGGATGAGTTACATCGCATGTTGAATGAGGATGAACTGAGGGATGCTGT 359
Query 360 CCTTCTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTTCTTGTGTTTGCAAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAAC 419
Query 420 TGACAAGCTTGGACTTCACTCTCTTCGCCAACGCCATTGGTACATCCAAAGCACCTGTGC 479
||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 420 TGATAAGCTTGGTCTTCACTCTCTTCGCCAACGCCATTGGTACATTCAAAGCACTTGTGC 479
Query 480 CACATCTGGAGAAGGTCTTTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTAGCAA 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CACATCTGGAGAAGGTCTCTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTACCAA 539
Query 540 GGTAAATAACT 550
|||||||||||
Sbjct 540 GGTAAATAACT 550
> AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding
family protein | chr2:19366623-19368840 FORWARD LENGTH=1036
Length=1036
Score = 536 bits (290), Expect = 8e-152
Identities = 449/527 (85%), Gaps = 6/527 (1%)
Strand=Plus/Plus
Query 18 AAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATTCTGATGGTAGGTCTTGA 77
||||||||||||| |||| ||||| |||||||| ||| | ||||||||||| ||||| ||
Sbjct 186 AAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTCTCGA 245
Query 78 TGCTGCTGGTAAGACCACTATTCTCTACAAGCTGAAGCTTGGCGAAATCGTCACTACCAT 137
||||||||||||||| ||||| ||||||||||| || ||||| || |||||||| || ||
Sbjct 246 TGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCACTAT 305
Query 138 TCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAACATCAGCTTCACTGTTTG 197
||| ||||| || |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 306 TCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCGTGTG 365
Query 198 GGATGTGGGGGGTCAGGACAAGATTCGTCCCCTGTGGAGGCACTACTTCCAGAACACACA 257
|||||| |||||||| |||||||| ||||| ||||||| || |||||||||||||||||
Sbjct 366 GGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACACACA 425
Query 258 AGGTCTTATCTTTGTGGTTGATAGCAACGA-CAGGGACCGAGTTGTGGAGGCGAGAGATG 316
|| ||||||||||| || || ||||| || | | ||||| ||||| || || || || |
Sbjct 426 GGGACTTATCTTTGTTGTGGACAGCAATGATC-GTGACCGTGTTGTTGAAGCCAGGGACG 484
Query 317 AA-TT-ACATCGCATGTTAAATGAGGATGAACTGAGGGATGCTGTCCTTCTTGTGTTTGC 374
| || ||| | ||| | |||||||||||| |||||||||| || || ||||| |||||
Sbjct 485 AGCTTCACAG-G-ATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTGC 542
Query 375 AAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACT 434
||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||
Sbjct 543 TAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGCT 602
Query 435 TCACTCTCTTCGCCAACGCCATTGGTACATCCAAAGCACCTGTGCCACATCTGGAGAAGG 494
||| |||||||| ||||| || |||||||| || ||||| |||||||| |||||||||||
Sbjct 603 TCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAGG 662
Query 495 TCTTTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTAGCAAGG 541
|| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 663 ACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGG 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5