BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325939

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasom...   621    1e-177


> AT5G14710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome 
assembly chaperone 3 (InterPro:IPR018788); Has 120 Blast 
hits to 120 proteins in 47 species: Archae - 0; Bacteria - 
0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other 
Eukaryotes - 7 (source: NCBI BLink). | chr5:4746332-4747934 
FORWARD LENGTH=666
Length=666

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 363/376 (97%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAAGCTTGGACACTAATTTTCCGGTGCGCCATAGAAAAATCTCCTTTGAAAGCAAG  60
            |||||||||||||||||||||||||| ||||||||||||||  |||| |||||||| |||
Sbjct  134  ATGGAAAGCTTGGACACTAATTTTCCTGTGCGCCATAGAAAGGTCTCGTTTGAAAGTAAG  193

Query  61   GGAAACAAGACAGAGATTGTGATTTGCAGCTATGAAGATCATATCCTTGTCATAGCAACA  120
            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  194  GGAAACAAGACAGAGATTGTGATCTGCAGCTATGAAGATCATATCCTTATCATAGCAACA  253

Query  121  CAGATTGGAGCCATGGGAACTATATTGCACGCAAGGAAGGAAG-AGGGCATGTCTGTTGA  179
            |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  254  CAGATTGGTGCCATGGGAACTATATTGCACGCAAGGAAGGAAGAAGGG-ATGTCTGTTGA  312

Query  180  ACCAACATTTAGTGTTTCAGTGATATTCGGAAAGCGAGATGAGCCAATGCTGACAGCAAC  239
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  313  ACCAACATTTAGTGTTTCAGTGATATTCGGAAAGCGAGACGAGCCAATGCTGACAGCAAC  372

Query  240  TGCTCGAAGACTCATTGAACACATAAGTTCTATTGTTCCCTCGAAGCCTCTGGTTCTCTC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  TGCTCGAAGACTCATTGAACACATAAGTTCTATTGTTCCCTCGAAGCCTCTGGTTCTCTC  432

Query  300  ACTTGGTCTCAAAGATCATTCTTCGGAGACATTGAAGGAAATAGTAGCGACGGTGATTGA  359
            |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  433  ACTTGGTCTCAAAGATCATTCTTCGGAGACGTTGAAGGAAATAGTAGCGACAGTGATTGA  492

Query  360  GAATCGCCTTTGGTAA  375
            ||||||||||||||||
Sbjct  493  GAATCGCCTTTGGTAA  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5