BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325951
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14880.1 | Symbols: | Potassium transporter family protein ... 3901 0.0
AT1G70300.1 | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477... 874 0.0
> AT5G14880.1 | Symbols: | Potassium transporter family protein
| chr5:4814244-4817667 FORWARD LENGTH=2346
Length=2346
Score = 3901 bits (2112), Expect = 0.0
Identities = 2268/2346 (97%), Gaps = 0/2346 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTCGAGCGTCTAAGCCCAAGAAATCCAATCAAGAAAGAATCTTGGTGGACGGTT 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGATCTCGAGCGTCTAAGCCCAAGAAATCCAGTTAAGAAAGAATCTTGGTGGACGGTT 60
Query 61 CTGACTTTAGCTTACCAGAGCTTAGGTGTAGTCTACGGAGATTTAGCAACTTCACCATTG 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGACATTAGCTTACCAAAGCTTAGGTGTAGTCTACGGAGATTTAGCAACTTCACCATTG 120
Query 121 TATGTCTACAAGAGCACTTTTGCTGAAGACATAACACATTCAGAGACAAACGAAGAGATC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TATGTCTACAAGAGCACTTTTGCTGAAGACATAACACATTCTGAGACAAACGAAGAGATC 180
Query 181 TTTGGTGTTCTGTCTCTTATCTTCTGGACATTAACTTTAATCCCACTTGTTAAATACGTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGGTGTTCTGTCTCTTATCTTCTGGACATTAACTTTAATCCCACTTGTTAAATACGTT 240
Query 241 TTTATTGTTCTTCGTGCTGATGATAATGGAGAAGGTGGGACTTTCGCTCTCTACTCTTTG 300
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 241 TTTATTGTTCTTCGTGCTGATGATAATGGTGAAGGTGGGACTTTTGCTCTCTACTCTTTA 300
Query 301 TTGTGTCGCCATGCTAGAATTAGCTCTTTGCCCAATTTCCAGCTCGCTGATGAGGACCTT 360
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTATGTCGCCATGCTAGAATCAGCTCTTTGCCCAATTTCCAGCTCGCTGATGAGGACCTT 360
Query 361 TCTGAGTATAAGAAAACTTCCGGGGAGAATCCGATGAGATTAAAAGTTCCGGGGTGGAGT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGAGTATAAGAAAAATTCCGGGGAGAATCCGATGAGATTAAAAGTTCCGGGGTGGAGT 420
Query 421 TTGAAAAACACTCTGGAGAAGCATAAGTTTCTGCAGAACATGTTGCTTGTTCTTGCTCTG 480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 421 TTGAAAAACACTCTGGAGAAGCATAAGTTTCTGCAGAATATGTTACTTGTTCTTGCTCTG 480
Query 481 ATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTTACACCTGCAATCTCTGTGTTCTCC 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 481 ATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTCACACCTGCAATCTCTGTTTTCTCA 540
Query 541 GCAGTCTCTGGATTAGAGTTATCCATGTCTAAGCAGCAACATCAATATGTGGAGGTGCCT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAGTCTCTGGATTAGAATTATCCATGTCTAAGCAGCAACATCAATATGTGGAGGTGCCT 600
Query 601 GTGGTCTGTGCAATACTGATACTCTTGTTCTCGCTACAACACTATGGAACACATCGTTTA 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGGTCTGTGCCATACTGATACTCTTGTTCTCGCTACAACACTATGGAACACATCGTTTA 660
Query 661 GGTTTTGTTTTTGCTCCCATTGTGCTTGCATGGCTTCTCTGCATAAGCACCATTGGTGTA 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GGTTTTGTTTTTGCTCCCATTGTGCTTGCATGGCTTCTCTGTATAAGCACCATTGGTGTA 720
Query 721 TACAACATCTTCCATTGGAATCCTCATGTTTACAAAGCATTGTCTCCTTATTACATCTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACAACATCTTCCATTGGAATCCTCATGTTTACAAAGCATTGTCTCCTTATTACATCTAC 780
Query 781 AAGTTCCTCAAGAAAACTCGTAAACGCGGATGGATGTCTCTCGGTGGCATCCTTTTATGC 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAGTTCCTCAAGAAAACTCGTAAACGCGGATGGATGTCCCTCGGTGGCATCCTTTTATGC 840
Query 841 ATTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGCCACTTCACTCAGTTGTCAATACAG 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 ATTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGACACTTCACTCAGTTGTCAATACAG 900
Query 901 ATTGCATTCACATTCGCTGTTTACCCGTCGCTAATCCTTGCATACATGGGTCAAGCCGCG 960
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 901 ATTGCATTCACATTCGCTGTTTACCCGTCGTTAATCCTCGCATACATGGGTCAAGCCGCG 960
Query 961 TATCTATCTAAGCACCATGTCCTCGAGAGTGATTACCGGATTGGATTTTATGTTTCCGTA 1020
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||
Sbjct 961 TATCTATCTAAGCACCATGTCCTCCAGAGTGACTACCGGATTGGATTCTATGTTTCTGTA 1020
Query 1021 CCCGAGCAAATAAGATGGCCAGTTTTGGCAATTGCTATATTGGCGGCTGTTGTTGGAAGT 1080
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1021 CCAGAGCAAATAAGATGGCCAGTTTTAGCAATTGCTATATTGGCAGCTGTTGTTGGAAGT 1080
Query 1081 CAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATGTACTTCTCTAGGTTGCTTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATGTACTTCTCTAGGTTGCTTC 1140
Query 1141 CCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCACGGTCAGATATATATCCCTGAG 1200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 CCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCATGGTCAGATATATATCCCTGAG 1200
Query 1201 ATCAATTGGACTCTCATGCTCTTGTGCTTAGCCGTCACCGTTGGATTCCGTGACACCAAA 1260
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1201 ATCAACTGGACTCTCATGCTCTTGTGCTTAGCCGTCACCGTTGGATTCCGCGACACCAAA 1260
Query 1261 CACATAAGCAATGCCTCAGGTTTGGCGGTTATTACCGTTATGCTGGTAACGACTTGCTTG 1320
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 CACATAAGCAATGCATCAGGTTTGGCGGTTATTACCGTTATGCTAGTAACGACTTGCTTG 1320
Query 1321 ATGTCTCTGGTAATAGTCTTATGCTGGCACAAAAGCTCCCTCTACGCGCTAGCCTTCATT 1380
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1321 ATGTCTTTGGTAATAGTCTTATGCTGGCGCAAAAGCTCCCTCTACGCACTAGCCTTCATT 1380
Query 1381 TTCTTTTTCGGAACAATTGAAGTTCTCTACTTCTCAGCTTCACTCATCAAATTCCTCGAA 1440
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1381 TTCTTCTTCGGAACAATTGAAGTTCTGTATTTCTCAGCTTCACTCATCAAATTCCTCGAA 1440
Query 1441 GGTGCTTGGGTTCCAGTCGCCCTCTCCTTCATCTTCCTCCTCATCATGTACGTTTGGCAC 1500
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGGGCTTGGGTTCCAGTCGCACTCTCCTTCATCTTCCTCCTCATCATGTACGTTTGGCAC 1500
Query 1501 TACGGGACCCTTAAGCGTTACGAATTTGACGTCCAAAACAAAGTCTCAATCAACTGGCTC 1560
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 TACGGAACCCTTAAGCGTTACGAATTTGACGTTCAAAACAAAGTCTCAATCAACTGGCTC 1560
Query 1561 CTCACACTCTTCGGCTCTTCAAACCTCGGAATTGTCCGAGTCCAGGGAATCGGCGTGATC 1620
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1561 CTCACACTTTTCGGCTCTTCAAACCTCGGAATTGTCCGAGTCCATGGAATCGGCGTGATC 1620
Query 1621 AACACTGAGCTTGTCTCTGGCATACCAGCTATCTTCTCTCATTTCATCACTAACCTCCCG 1680
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AACACCGAACTTGTCTCGGGCATACCAGCTATCTTCTCTCATTTCATCACTAACCTCCCG 1680
Query 1681 GCGTTTCACCAAGTCGTCGTCTTCCTCTGCGTGAAATCTGTCCCCGTCCCGCATGTGAAA 1740
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCGTTTCACCAAGTCGTTGTCTTCCTCTGCGTGAAATCTGTCCCCGTCCCGCATGTGAAA 1740
Query 1741 CCGGAGGAACGGTTTCTCGTTGGAAGGGTCGGACCGAAGGAGTACCGGCTCTACCGGTGT 1800
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1741 CCGGAGGAACGGTTTCTAGTGGGAAGGGTTGGACCGAAGGAGTACCGGCTCTACCGGTGT 1800
Query 1801 ATAGCCCGGTATGGATACCGCGATGTACACAAAGACGATGTCGAGTTTGAGAACGACCTC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1801 ATAGCCCGGTATGGATACCGCGATGTACACAAAGACGATGTCGAGTTTGAGAATGACCTC 1860
Query 1861 ATTTGCAGTATCGCGGAGTTTATCCGTTCAGATAAACCATTGAATTACTCCCCGGACCCG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATTTGCAGTATCGCGGAGTTTATCCGTTCAGATAAACCATTGAATTACTCCCCGGACCCG 1920
Query 1921 GAAAACGAATCTGGAACAAGTGAGAGGCTAACTGTCGTCGCGGCTTCTTCATCCAATCTT 1980
||||| |||||||||| || ||||||||||||||||||||||||||| || |||||||||
Sbjct 1921 GAAAATGAATCTGGAATAAATGAGAGGCTAACTGTCGTCGCGGCTTCCTCTTCCAATCTT 1980
Query 1981 GAAGGCGTACAAATCTTTGAAGACGATGGTTCTGACAAACAAGAACCGTCATCTTCTTCG 2040
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1981 GAAGGCGTACAAATCTATGAAGACGATGGTTCTGACAAACAAGAACCATCTTCTTCTTCG 2040
Query 2041 GAGGTAATCGTGGTGGCTCCTTCTCCGAGAATCAAGAAAAGGGTACGGTTTGTGTTACCA 2100
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2041 GAGGTAATCATGGTGGCTCCTTCTCCGAGATTCAAGAAAAGGGTACGGTTTGTGTTACCA 2100
Query 2101 GAAAGTGCGAGGATAGATAGATCCGCGGAGGAGGAGCTAACAGAGCTCACAGAGGCGCGT 2160
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 2101 GAAAGTGCGAGGATCGATAGATCGGCGGAGGAGGAGCTAACAGAGCTCACTGAGGCTCGT 2160
Query 2161 GAGGCAGGAATGGCGTTTATAATGGGACATTCGTATGTGAGAGCAAAATCTGGATCAAGT 2220
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 2161 GAGGCAGGAATGGCGTTTATAATGGGACATTCATATGTGAGAGCAAAATCGGGATCGAGT 2220
Query 2221 GTGATGAAGAAGATCGCTATAAACTTTGGCTACGATTTTCTAAGAAGAAACTCGAGAGGA 2280
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 2221 GTGATGAAGAAGATCGCTATTAACTTTGGCTACGATTTTCTTAGAAGAAACTCAAGGGGT 2280
Query 2281 CCTTGTTATGGTCTCTCTACTCCTCACGCTTCTACTTTAGAAGTTGGTATGGTTTATATC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 CCTTGTTATGGTCTCTCTACTCCTCACGCTTCTACTTTAGAAGTTGGTATGGTTTATATC 2340
Query 2341 GTTTGA 2346
||||||
Sbjct 2341 GTTTGA 2346
> AT1G70300.1 | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477880-26481630
REVERSE LENGTH=2859
Length=2859
Score = 874 bits (473), Expect = 0.0
Identities = 1457/1916 (76%), Gaps = 131/1916 (7%)
Strand=Plus/Plus
Query 36 CAAGAAAGAATCTTGGTGGACGGT-TCTGACTTTAGCTTACCAGAGCTTAGGTGTAGTCT 94
|||||| ||||| ||| | || || | | || ||||| || || ||||||||||| || |
Sbjct 430 CAAGAAGGAATCATGGAGAACAGTAT-TAACATTAGCGTATCAAAGCTTAGGTGTTGTAT 488
Query 95 ACGGAGA-TTTAGCAACTTCACCAT-TGTATGTCTACAAGAGCACTTTTGCTGAAGACAT 152
||||||| || || | |||||| | | ||||| ||||| ||||| || |||||||||||
Sbjct 489 ACGGAGACTTGAG-TATTTCACC-TCTATATGTATACAAAAGCACATTCGCTGAAGACAT 546
Query 153 AACA-CATTCAGAGA-CAAACGAAGAGATCTTTGGTGTTCTGTCTCTT-ATCTTCTGGAC 209
|| || || || | | ||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 547 -TCATCACTCTGA-ATCCAACGAAGAGATCTTTGGTGTTTTGTCT-TTCATCTTTTGGAC 603
Query 210 ATTAACT-TTAATCCCACTTGTTAAATACGTCTTT-ATTGTTCTTCGTGCTGATGATAAT 267
| | ||| || |||| ||| |||||||||| ||| || |||||| | || |||||||||
Sbjct 604 AATCACTCTT-GTCCCTCTTCTTAAATACGT-TTTCATAGTTCTTAGAGCAGATGATAAT 661
Query 268 GGAGAAGGTGGGACTTTCGCTCTCTACTC-TTTGTTGTGTCGCCATGCTA-GAATTAGCT 325
|| ||||| || ||||| ||||| ||||| || || ||||| || || | || | | ||
Sbjct 662 GGTGAAGGAGGCACTTTTGCTCTTTACTCGCTT-TTATGTCGACACGC-ACGAGTCAACT 719
Query 326 CTTTGCCCAATT-TCCAGCTCGCTGATGAGGACCTT-TCTGAGTATAAGA-AAACTTC-- 380
| || || | || | || | ||||||||| | ||| | ||||||||||| | |||
Sbjct 720 CGTTACCGAGTTGT-CAATTGGCTGATGAGCAGCTTAT-TGAGTATAAGACTGA-TTCAA 776
Query 381 -CGGGGAGAATCCGATGAGATTAA--AAGTTCCGGGGTGGAGTTTGAAAAAC-ACTCTGG 436
|| | | ||||| | || ||| | | ||||||| ||| | ||||| |
Sbjct 777 TTGGTTCGTCTTCGATG-CCTCAATCTGGTTTTGCAG-CGAGTTTG-AAATCTACTCTTG 833
Query 437 AGAAGCAT-AAGTTTCTGCAGAACATGTTGCTTGTTCTTGCTCTGATTGGGACTTGTATG 495
|||| ||| ||||| ||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 834 AGAAACATGGAGTTT-TGCAGAAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATG 892
Query 496 GTTATTGGTGATGGTGTTCTTACACCTGCAATCTCTGTGTTCTCCGCAGTCTCTGGA-TT 554
|||||||||||||||||||| || ||||| || || || || || ||||| ||||| ||
Sbjct 893 GTTATTGGTGATGGTGTTCTCACGCCTGCTATTTCAGTTTTTTCTGCAGTATCTGGTGTT 952
Query 555 AGAG-TTATCCATGTCTAAGCAGCAACATCAA-TATGTGGAGGTGCCTG-TGGTCTGTGC 611
||| || || ||||||||| |||| || ||| ||| | || | |||| || | ||||
Sbjct 953 -GAGCTT-TCAATGTCTAAGGAGCATCA-CAAGTATATAGAACTCCCTGCTGCT-TGTGT 1008
Query 612 AATACTGATAC-TCTTGTTCT-CGCTACAACACTATGGAACACATC-GTTTAGG-TT-TT 666
||| |||||| | ||||| | | || || ||||| || ||||| | | | || || ||
Sbjct 1009 AATTCTGATAGGT-TTGTT-TGCACTTCAGCACTACGGTACACA-CAGGGTCGGGTTCTT 1065
Query 667 GTTTTTGCTCCCATTG-TGCT-T-GCATGGCTTCTCTGCATAAGCACCATTGGTGTATAC 723
||| || ||| || | || | | ||||| | || || ||| |||| ||||| |||
Sbjct 1066 GTTC--GC-CCCGGTGATTCTGTTG--TGGCTAATGTGTATCAGCGCCATCGGTGTTTAC 1120
Query 724 AACATCTTCCATTGGAATCCTCATGTTTACAAAGCA-TTGTCTCCTTATTACATCTACAA 782
||||| ||||||||||| || ||||| ||| ||||| || |||||||||||||| |||||
Sbjct 1121 AACATTTTCCATTGGAACCCGCATGTGTACCAAGCACTT-TCTCCTTATTACATGTACAA 1179
Query 783 GTTCCTCAAGAAAACTCGTAA--ACGCGGATGGATGTCTCTCGGTGGCATCCTTT-TATG 839
||||||||||||||||| || | | || ||||||||||| ||||| ||| || | ||
Sbjct 1180 GTTCCTCAAGAAAACTCA-AAGTA-GAGGCTGGATGTCTCTTGGTGGTATC-TTACTCTG 1236
Query 840 CATTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGCCACTTCACTCAGTTGTCAATACA 899
||||||||| || ||||| |||||||| |||||||| || || |||| | ||||| ||
Sbjct 1237 CATTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGACATTTTTCTCAACTCTCAAT-CA 1295
Query 900 -GATTGCATTCACATTCGCT-GTTTACCCGTCGCTA-ATCCTTGCATACATGGGTCAAGC 956
|||||| || || | | || ||||||||||| || || || || |||||||| |||||
Sbjct 1296 AGATTGCTTTTACGT-CACTTGTTTACCCGTC-CTTGATACTCGCCTACATGGGACAAGC 1353
Query 957 CGCGTATCTATCTAAGCACCATGTCCTCGAGAGTGATTACCGGATTGGATTTTATGTTTC 1016
|| ||||| ||| |||| ||| | | || || || ||| || || |||||||| ||
Sbjct 1354 AGCTTATCTCTCTCAGCATCATATTATTGAAAGCGAATACAATATCGGGTTTTATGTATC 1413
Query 1017 CGTACCCGAGCAA-AT-AAGATGGCCAGTT-TTG-GCAATTGCTATATTGGCGGCTGTTG 1072
||||| || || || ||||||||||||| ||| | | | |||||| | || ||||| |
Sbjct 1414 GGTACCAGA--AAGATTAAGATGGCCAGTTCTTGTG-A-TCGCTATACTCGCTGCTGTAG 1469
Query 1073 TTGGAAGTCAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATG-TACTTC-TCT 1130
|||||||||| ||||| |||||||||||||||||||||||||| ||||| | || | | |
Sbjct 1470 TTGGAAGTCAAGCAATCATCACAGGAACATTCTCGATCATCAAACAATGCT-CTGCAT-T 1527
Query 1131 AGGTTGCTTCCCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCACGGTCAGATATA 1190
|| |||||||| ||||| || || || || || || || | ||| ||||||||||| ||
Sbjct 1528 GGGATGCTTCCCTAAAGTGAAGATTGTTCATACGTCATCCAAAATCCACGGTCAGATTTA 1587
Query 1191 TATCCCTGAGATCAATTGGACTCTC-ATGCT-CT-TGTGCTTAGCCGTCACCGTTGGATT 1247
||||||||||||||||||| ||| ||| | || ||| ||||| |||||| |||| ||
Sbjct 1588 CATCCCTGAGATCAATTGGA-TCTTGATGGTTCTCTGT--TTAGCTGTCACCATTGGCTT 1644
Query 1248 CCGTGACACCAAACACATAAGCAATGCCTCAGGTTTGGCGGTTATTACCGTTATGCTGGT 1307
| | |||||||| | | | ||||| ||||| ||||||||||| || |||||||||||
Sbjct 1645 CAGAGACACCAAGCGGTTGGGTAATGCTTCAGGATTGGCGGTTATAACTGTTATGCTGGT 1704
Query 1308 AACGACTTGCTTGATGTCTCTGGTAATAGT-CTTATGCTGGCACAAAAGC-TCCCTCTAC 1365
|| || ||||| ||||| || || || || ||| ||||||||||| || || |||
Sbjct 1705 GACAACATGCTTAATGTCACTAGTGATTGTACTT-TGCTGGCACAAGAGTGTCA-TCTTT 1762
Query 1366 GCGCTAGCCTTCATTTTCTTTTTCGGAACAATTGAAGT-TCTCTACTTCTCAGCTTCACT 1424
|| | | ||| || | || ||||| ||||| ||| | |||||||||||| ||||| ||
Sbjct 1763 GCAATCGTATTCGTTGTATTCTTCGGCACAATCGAA-TCTCTCTACTTCTCTGCTTC-CT 1820
Query 1425 CA-TCAAATTCCTCGAAGGTGCTTGGGTTCCAGTCGCCCTCTCCTTCAT-CTTCCTCCTC 1482
| |||||||||||||||| || ||||||||| |||||||| | || | |||||| |||
Sbjct 1821 TAATCAAATTCCTCGAAGGCGCATGGGTTCCAATCGCCCTCGCTTTT-TGCTTCCTTCTC 1879
Query 1483 ATC-ATGT--ACGTTTGGCACTACGGGACCCTTAAGCGTTACGAATTTGACGTCCAAAAC 1539
| |||| || || |||||||||| || || ||||| || || | || || ||||||
Sbjct 1880 G-CGATGTGTAC-TT-GGCACTACGGAACACTCAAGCGCTATGAGTACGATGTGCAAAAC 1936
Query 1540 AAAGTCTCAATCAACTGGCTCCTCACACTCTTCGGCTCTTCAAACC-TCGGAATTGTC-C 1597
|||||||| ||||||||||||||| |||| | || ||||| |||| || | | |
Sbjct 1937 AAAGTCTCGGTCAACTGGCTCCTCAG--TCTTAG--TC---AAACCCTCGGGATCG-CAC 1988
Query 1598 GAGTCCAG-GGAATCGG-CGTGATCAACACTGAGCTTGTCTCTGGCATACCAGCTATCTT 1655
| |||| | || | || | | ||| |||| ||||| |||||||| | || || || ||
Sbjct 1989 GTGTCC-GTGGCCTTGGAC-TCATCCACACCGAGCTCGTCTCTGGTGTCCCCGCGATATT 2046
Query 1656 CTCTCATTTCATCACTAACCTCCCGGCGTTTCACCAAGT-CGTCGTCTTCCTCTGCGTGA 1714
||||||||| |||| |||||||| || || ||||| || | ||||||||||||| || |
Sbjct 2047 CTCTCATTTTGTCACCAACCTCCCTGCCTTCCACCAGGTTC-TCGTCTTCCTCTGTGTCA 2105
Query 1715 AATCTGTCCCCGTCCCGCATGTGAAACCGGAGGAACGGTTTCTCGTTGGAAGGGTCGGAC 1774
||||||| || || |||||||| || ||||||||||||| || ||| | |||| |
Sbjct 2106 AATCTGTTCCGGTTCCGCATGTTCGTCCTCAGGAACGGTTTCTAGTAGGACGCATCGGGC 2165
Query 1775 CGAAGGAGTACCGGC-TCTACCGGTGTATAGCCCGGTAT-GGATACCGCGATGTACACAA 1832
| || |||| ||| | | ||||| || || | ||||| | || ||||| ||||| |||||
Sbjct 2166 CAAAAGAGTTCCG-CATATACCGTTGCATTGTCCGGT-TCGGGTACCGTGATGTCCACAA 2223
Query 1833 AGACGATGTCGAGTTTGA-GAACGACCTCATTTGCAGTATCGCGGAGTTTATCCGT 1887
||||||| |||||||||| | ||| || | || || || || ||||||||||||
Sbjct 2224 AGACGATTTCGAGTTTGAAGG-CGATCTTGTATGTAGCATTGCCGAGTTTATCCGT 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116465264400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5