BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325952
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14890.1 | Symbols: | NHL domain-containing protein | chr5:... 2213 0.0
> AT5G14890.1 | Symbols: | NHL domain-containing protein | chr5:4817949-4821808
FORWARD LENGTH=2646
Length=2646
Score = 2213 bits (1198), Expect = 0.0
Identities = 1388/1480 (94%), Gaps = 12/1480 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAAATATGCAAATTTGTTGATTTTGTCTGTGATTTTCATGTTTTTCTTTTGTGGG 60
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 108 ATGAGGAAAAATGCAAATTTGTTGATTTTGTTTATGATTTTCATGTTTTTCTTTTGTGGG 167
Query 61 TTATCCTCAGTTTCAGCTAAACCTCCTCCTGTTAAGATTGTAAGTGGGCTTGTGACAAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTATCCTCAGTTTCAGCTAAACCTCCTCCTGTTAAGATTGTAAGTGGGCTTGTGACAAAT 227
Query 121 GTAGCATCAATTCTCTGGAAATGGTTATGGTCTCTTCAAACATCCTCAACCACAACAACC 180
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 228 GTAGCATCGATACTCTGGAAATGGTTATGGTCTCTTCAAACATCCACAACCACAACAACC 287
Query 181 ACCACAAAATCTGGTGTTTCTAGCCGTTCGATGGTGAAATACGAAAGTGGATATAACATC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 ACCACAAAATCTGGTGTTTCTAGCCGTTCGATGGTGAAATACGAAAGTGGATATAACATG 347
Query 241 GAGACAGTGTTTGATGGAAGTAAGCTTGGCATTGAGCCATATGCAATTGAAGTTTCCCCT 300
|||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 348 GAGACAGTTTTTGATGGAAGTAAGCTTGGGATTGAGCCCTATGCGATTGAAGTTTCCCCT 407
Query 301 AATGGAGGAGAGCTTATTGTCTTGGATTCTGAGAATAGTAATATCCACAAAATCTCCATG 360
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 408 AATGGAGGAGAGCTTATTGTCTTGGATTCTGAGAACAGTAACATCCACAAAATCTCCATG 467
Query 361 CCTCTTTCTAGATATGCTAAACCAAAGCTAGTCTCTGGTTCACAAGAAGGCTACACAGGA 420
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 CCTCTTTCTAGATATGGTAAACCAAAGCTACTCTCTGGTTCACAAGAAGGCTACACAGGA 527
Query 421 CACGTCGAT-GGAAAGCTCAAAGAAGCGAAAATGAATCGTCCTCGAGGCCTAGCCATCGA 479
|| |||||| ||||| ||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 528 CATGTCGATGGGAAA-CTCAAAGAAGCGAGAATGAATCGTCCTCGAGGATTAGCCATGGA 586
Query 480 CGACAGTGGAAACATCTACGTCGCCGATACTAACAATATGGCCATACGGAAGATCAGCGA 539
|||||| || |||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 587 CGACAGGGGGAACATCTACGTCGCCGATACTATCAATATGGCCATACGCAAGATCAGCGA 646
Query 540 CGACGGAGTCTCAACCATCACCGCCGGAGGAAGATGGAGCGGTGGATCTAAAGAGGAGTC 599
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 647 TGACGGAGTCTCAACCATCGCCGCTGGAGGAAGATGGAGCGGTGGATCTAAAGAGGAGTC 706
Query 600 AATGAGATTCTCCGATGACTTTGATTTGATATACGTCTCTTCAAGCTGCTCTCTAT-TAG 658
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||
Sbjct 707 AATGAGATTCTCCGATGACTTTGATTTAATATATGTCTCTTCAAGCTGCTCTCT-TCTAG 765
Query 659 TCATTGATCGAGGGAATCAAATGATTAAAGAGATTCAGCTTCATGATCACGACTGTTCTC 718
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 766 TCATTGATCGAGGGAATCAATTGATTAAAGAGATTCAGCTTCACGATCATGACTGTTCTC 825
Query 719 ATCAGGAACCCGACACAGATAATCTCCATCTTGGAACAGCTTTGCTTGTAGCTGCTGTGT 778
| | ||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 826 AACCGGAACCCGACACAGATAGTCTCCATCTTGGAACCGCTTTGCTGGTTGCTGCTGTGT 885
Query 779 TCTTTGGATATATGTTTGCATTATTAGTACGTAGAGTACGATCGTTGTTCTCTTCATCTG 838
||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||
Sbjct 886 TCTTTGGGTATATGTTAGCATTATTAGTTCGTAGGGTACGATCGCTGTTCTCTTCGTCTA 945
Query 839 GTCATG--A-T-A-A-TAAGAGGCATGTAGCAAAACCGAGCATGACTATGGCTCCATACC 892
| |||| | | | | |||||| |||||||||| |||||||||||| |||||||| ||||
Sbjct 946 GCCATGATACTAAGAGTAAGAGACATGTAGCAACACCGAGCATGACAATGGCTCCGTACC 1005
Query 893 AACGTTATCCAAGACCGGTTCGACAGCCCTTAATCCCACCTCAACATGAACCGGAAAAAG 952
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1006 AACGTTATCCAAGACCGGTACGACAGCCATTAATCCCACCTCAACATGAATCGGAAAAAG 1065
Query 953 AAGAAGGATTTCTCGGTTCGCTTGGAAAGCTAGTCGTGAAAACCGGTTCTTCGGTTTCCG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AAGAAGGATTTCTCGGTTCGCTTGGAAAGCTAGTCGTGAAAACCGGTTCTTCGGTTTCCG 1125
Query 1013 AGATGATGTCCGGTTCCAGAAATGTAATCCCCCCTAACTTTCATCAGTACCACCATCAGC 1072
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1126 AGATGATGTCCGGTTCTAGAAATGTAATTCCCCCAAACTTTCATCAGTACCACCATCAGC 1185
Query 1073 AAGAACCGAACCAATGGCCGGTACAAGAGAGCTAT-GCTATACCGGAAGAAGATGGACCG 1131
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1186 AAGAACCGAACCAATGGCCGGTACAAGAGAGTT-TCGCTATACCGGAAGAAGATGGACCA 1244
Query 1132 CCGGCTTTAGAACCGAGACCAGGCACAAATCCGGATAAACCCTATCTCAGAGCACAAGGA 1191
|| ||||||||||||||| |||| |||||||| ||||||||||| || ||||||||||||
Sbjct 1245 CCAGCTTTAGAACCGAGATCAGGTACAAATCCAGATAAACCCTACCTTAGAGCACAAGGA 1304
Query 1192 ACCAGCCAAAACCGGTCTTATTACCAAGACTATGACCAGTACCAAAACCAGCAGAAACGA 1251
|||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1305 ACCAACCAAAACCGGTCTTATTACCAAGACTATGATCAATACCAAAACCAGCAGAAACGC 1364
Query 1252 AATGTGAACGATACTGCGTCGTTCGAAGATAATCGAGAGAAGAGCGAGATTGTGTTTGGG 1311
|||||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1365 AATGTGAACGATACAGCGTCGTTCGAAGATAACCGAGAGAAGAACGAGATTGTTTTTGGG 1424
Query 1312 GCAGTTCAGGAGCAGGACGGTCGCCGGGAAGCCATGGTGATCAAGGCCGTTGATTTCAAC 1371
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1425 GCAGTTCAGGAGCAGGACGGTCGCCGAGAAGCCATGGTGATCAAGGCCGTTGATTTCAAC 1484
Query 1372 GAAGCCATAAACGATCAGCGAAATCTACGGCCTAGAATTAATTATATGGGATATTCTTCT 1431
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1485 GAAGCCATTAACGATCAGCGCAATCTACGGCCCAGAATTAATTATATGGGATATTCTTCA 1544
Query 1432 CAATTACCGGGACTAACGGCTTTTTGCACCGACTTAACaa 1471
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1545 CAATTACCGGGACTAACGGCTTACTGCACCGACTTAACAA 1584
Score = 926 bits (501), Expect = 0.0
Identities = 559/586 (95%), Gaps = 7/586 (1%)
Strand=Plus/Plus
Query 1535 CTCTGTATTCATCTCTCACCCTTTCTCTTAATCTTCT-CGATCTTTTCTC-AAATCAATT 1592
||||||||||||||||| ||||||||||||||||| | ||||| |||||| ||||||||
Sbjct 1789 CTCTGTATTCATCTCTCTCCCTTTCTCTTAATCTT-TACGATC-TTTCTCAAAATCAATC 1846
Query 1593 TCATTGTTTCATGGGGCTTCAATCTTTTCCGATCTCTGAAATGGACGCGACCGATGAAAT 1652
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TCATTGTTTCATGGGCCTTGAATCTTTTCCGATCTCTGAAATGGACGCGACCGATGAAAT 1906
Query 1653 GTACGAAGCGATGTTCGCGAAACGAGGTTGTTGTTTTATTCTTCCTTGTCTTGGATCATC 1712
| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1907 GCACGAAGCCATGTTCGCGAAACGAGGTTGTTGTTTTATCCTCCCTTGTCTTGGATCATC 1966
Query 1713 TCAGCCATCTGGTCCTAACGGATCTGTGTGGTGGCAACGAATCAGAACCGTTGATGAATT 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1967 TCAGCCATCTGGTCCTAACGGATCTGTGTGGTGGCAACGAATCAGAACCGTTGATAAATT 2026
Query 1773 GGAGCCTGATGAGCGGTGGTGGGTCTCCGGGTGGATGAAGATGAGGGAATGGTCTGAGCT 1832
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2027 GGAGCCTGATGAGCGGTGGTGGGTCTCTGGGTGGATGAAGATGAGGGAATGGTCTGAGAT 2086
Query 1833 CGTGGCTGGTCCCAAATGGAAAACTTTTATCCGTCGCTTTGGACGTAATCACTGCTG--- 1889
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 CGTAGCTGGTCCCAAATGGAAAACTTTTATCCGTCGCTTTGGACGTAATCACTGCTGCAA 2146
Query 1890 CGGTGGCGTTGACGGTGGTTGTAATCGGCCGGAGCATGTTAGTTTCCGGTATGATTCGTG 1949
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2147 CGGTGGCATTGACGGTGGTTGTAATCGGCCGGAGCATGTTAGTTTCCGGTACGATTCGTG 2206
Query 1950 GAGTTACTCTTTGAATTTCGACGACGGAAAACAGACGGGTCATTTTGAAGATGAGTTTCC 2009
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2207 GAGTTACTCGTTGAATTTCGACGACGGGAAACAGACGGGTCATTTCGAAGATGAGTTTCC 2266
Query 2010 TTATCGTGATTACTCGATGAGGTTCGCCGCCCCGTCTCTGCCGGTTTCTACTAAATGCTC 2069
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2267 TTACCGTGATTACTCGATGAGGTTCGCTGCGCCGTCTCTGCCGGTTTCTACTAAATGCTC 2326
Query 2070 CATTGATTTCGACAATGATAACCACGCGCCGTCGCTGTTTAAGTGA 2115
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 CATTGATTTCGACAATGATAACCACGCGCCGTCGCTGTTTAAGTGA 2372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104868938505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5