BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325967
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15100.1 | Symbols: PIN8, ATPIN8 | Auxin efflux carrier fami... 1749 0.0
> AT5G15100.1 | Symbols: PIN8, ATPIN8 | Auxin efflux carrier family
protein | chr5:4892159-4893937 REVERSE LENGTH=1104
Length=1104
Score = 1749 bits (947), Expect = 0.0
Identities = 1054/1106 (95%), Gaps = 6/1106 (1%)
Strand=Plus/Plus
Query 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCA 60
Query 61 ATGACCTTAGGTTTCCTCTCTGCAAAACATATAAAGCTCTTCTCACCCGAGCAATGCGCA 120
||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 61 ATGACATTAGGTTTCCTCTCTGCAAGACATCTAAAGCTCTTCTCACCCGAACAATGCGCA 120
Query 121 GGCATCAACAAATTCGTCGCCAAATTCTCAATCCCTTTGCTTTCTTTTCAAATAATCTCT 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGCATCAACAAATTCGTGGCCAAATTCTCCATCCCTTTGCTTTCTTTTCAAATAATCTCT 180
Query 181 CAAAACAACCCCTAT-AAGATGAGCCCTAAACTCATTCTCTCTGACATTCTCCAGAAAAT 239
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 GAAAACAACCCCT-TCAAGATGAGCCCTAAACTCATTCTCTCTGATATTCTCCAGAAATT 239
Query 240 CTTAGCCGTTGTTGTATTAGCCGCGGTTTTAAGATTCTGGCATCCACCAGGAGGAAGAGG 299
||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 240 CTTAGTCGTTGTTGTATTAGCCATGGTTTTAAGATTCTGGCATCCAACAGGAGGAAGAGG 299
Query 300 AGGAAAATTGGGTTGGCTCATAACCGGTTTATCTATATCGGTGTTGCCAAACACTCTCAT 359
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 300 AGGAAAATTGGGTTGGGTCATAACCGGATTATCTATATCGGTGTTGCCAAATACTCTCAT 359
Query 360 TCTTGGAATCCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTGGAATGCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCA 419
Query 420 GATTGTTGTGTTGCAAAGCTTGATTTGGTATAGCATCTTGCTCTTCTTGTTCGAGCTTAA 479
||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 420 GATTGTTGTCTTGCAAAGCTTGATTTGGTACACCATCTTGCTCTTTTTGTTCGAGCTTAA 479
Query 480 TGCCGCAAGGGCGTTACCTTCATCTGGACCTTCCTTAGAATATACAGGCAATGACCATGA 539
||||||||||||||||| || |||||| ||||| ||||| |||||||||||||||| ||
Sbjct 480 CGCCGCAAGGGCGTTACCATCTTCTGGAGCTTCCCTAGAACATACAGGCAATGACCAGGA 539
Query 540 AGAGGCTAATATAGAGGAAGAGCCAAAAGAAGAA-A--ACGAAGAAGAAGTAGCAATAGT 596
|||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 540 AGAGGCTAATATAGAGGACGAGCCAAAAGAAGAAGAGGACGAAGAAGAAGTAGCAATAGT 599
Query 597 GAGAACAAGATCTATTGGAACTATGAAGATTTTATTGAAGGCTTGGAGAAAGCTTATAAT 656
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 GAGAACAAGATCTGTTGGAACTATGAAGATTCTATTGAAGGCTTGGAGAAAGCTTATAAT 659
Query 657 CAATCCTAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 716
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAATCCAAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATT 719
Query 717 GGGATGGAATTTGCCAGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 776
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGGATGGAATTTGCCTGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTT 779
Query 777 AGGAATGGCCATGTTCAGCTTAGGTCTTTTCATGGCATCACAAAGTAGTATCATAGCATG 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 AGGAATGGCCATGTTCAGCTTAGGTCTGTTCATGGCATCACAAAGTAGTATCATAGCATG 839
Query 837 TGGAACAAAAATGGCGATTATAACAATGCTCCTCAAGTTCGTATTAGGACCTGCTCTTAT 896
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TGGTACAAAAATGGCGATTATAACAATGCTGCTCAAGTTCGTATTAGGACCTGCTCTTAT 899
Query 897 GATTGCTTCCGCGTTTTGCATCAGATTAAGAAGTACTCTCTTCAAAGTCGCAATATTACA 956
||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 900 GATTGCTTCTGCGTATTGCATCAGATTAAAAAGTACTCTCTTCAAAGTAGCAATATTACA 959
Query 957 GGCTGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCATCC 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 GGCAGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCACCC 1019
Query 1017 GGAGATCATTAGTACCCCTGGTGATCTTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1076
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAGATCATTAGTACTGG-GGTGATATTTGGAATGCTAATTGCCTTACCAACAACTTTGG 1078
Query 1077 CATATTATTTTCTATTGGACCTATGA 1102
||||||||||||||||||||||||||
Sbjct 1079 CATATTATTTTCTATTGGACCTATGA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5