BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325972
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 |... 1574 0.0
AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr... 78.7 1e-13
> AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3
| chr5:4913699-4915892 REVERSE LENGTH=1480
Length=1480
Score = 1574 bits (852), Expect = 0.0
Identities = 920/952 (97%), Gaps = 8/952 (1%)
Strand=Plus/Plus
Query 1 ATGTATATGTATGAGGAGGAAAGGAACAATATTAATAATAATCAAGAAGGATTGAGATTG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 284 ATGTATATGTATGAGGAGGAAAGGAACAATATCAATAATAATCAAGAAGGACTGAGATTG 343
Query 61 GAGATGGCCTTTCCACAACATGGCTTCATGTTTCAGCAACTCCATGAAGACAATGCTCAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GAGATGGCCTTTCCTCAACATGGCTTCATGTTTCAGCAACTCCATGAAGACAATGCTCAT 403
Query 121 CACTTACCTTCCCCTACCTCTCTCCCTTCTTGTCCTCCTCACCTCTTCTATGGAGGAGGA 180
|||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 404 CACTTACCTTCCCCAACCTCTCTCCCCTCTTGTCCTCCTCATCTCTTCTAT---GGAGGA 460
Query 181 GGAGGAAACTACATGATGAACAGATCAATGTCGTTCACGGGAGTATCAGATCATCATCAT 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 461 GGAGGAAACTACATGATGAACAGATCAATGTCGTTCACGGGAGTATCAG---ATCATCAT 517
Query 241 CATCTAACTCAAAAAAGCCCGACAACAACGAACAACATGAATGATCAAGACCAGGTAGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CATCTAACTCAAAAAAGCCCGACAACAACGAACAACATGAATGATCAAGACCAGGTAGGC 577
Query 301 GAGGAAGACAATCTATCAGATGATGGGTCACATATGATGTTAGGAGAGAAGAAGAAGAGG 360
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 578 GAGGAAGACAACCTATCAGACGATGGGTCACATATGATGTTAGGAGAGAAGAAGAAGAGG 637
Query 361 CTGAATTTAGAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CTGAATTTAGAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAG 697
Query 421 CCAGAGAGGAAGATGCAGCTTGCTAAGGCTTTAGGGTTGCAGCCTAGGCAGATTGCGATA 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 698 CCAGAGAGGAAGATGCAGCTTGCTAAGGCTTTAGGATTGCAGCCTAGGCAGATTGCAATA 757
Query 481 TGGTTTCAGAACAGGAGAGCTAGGTGGAAGACAAAGCAGCTCGAGAGAGACTATGATTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TGGTTTCAGAACAGGAGAGCTAGGTGGAAGACAAAGCAGCTCGAGAGAGACTATGATTCT 817
Query 541 CTCAAGAAACAGTTCGATGTTTTGAAATCAGACAATGATTCTCTTCTTGCCCACAACAAG 600
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 818 CTCAAAAAACAGTTCGATGTTTTGAAATCGGACAATGATTCTCTTCTTGCCCACAACAAG 877
Query 601 AAACTACATGCTGAGTTAGTGGCATTGAAAAAACACGACCGTAAAGAATCAGCAAAGATC 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 878 AAACTACATGCTGAGTTAGTGGCATTGAAGAAACACGACCGTAAAGAATCAGCAAAGATC 937
Query 661 AAGAGAGAATTGGCAGAAGCTTCATGGAGCAACAATGGGAGCACAGAAAATAATCATAAC 720
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 938 AAGAGAGAATTCGCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAAAATAATCATAAC 997
Query 721 AATAATAGTTCAGACGTTAATCATGTGAGCATGATCAAAGATCTTTTTCCCT-CTTCAAT 779
|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 998 AATAATAGTTCAGACGCTAATCATGTGAGCATGATCAAAGATCTTTT-CCCTTCTTCGAT 1056
Query 780 CCCATCCGCAACCACGACCACGACCTCGACCAATATTGATCATCAGATTGTTCAAGAACA 839
|| |||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 1057 CCGATCCGCGACCGCGACCACGACCTCTACCCATATTGATCATCAGATTGTTCAAGATCA 1116
Query 840 AGATCCAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCGGCTAGTTATTG 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGATCAAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGTCGGCTAGTTATTG 1176
Query 900 GGCATGGCCTGACCAGCAGCAACAACATCACAATCATCATCAGTTCAATTGA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GGCATGGCCTGACCAGCAGCAACAACATCACAATCATCATCAGTTCAATTGA 1228
> AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73481-75538
FORWARD LENGTH=1222
Length=1222
Score = 78.7 bits (42), Expect = 1e-13
Identities = 128/165 (78%), Gaps = 23/165 (14%)
Strand=Plus/Plus
Query 49 GGATTGAGATTGGAGATGGCCTTTCCACAACATGGCTTCATGTTTCAGCAACTCCATGAA 108
||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| ||||||
Sbjct 149 GGATTGAGATTAGAGATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAA 208
Query 109 GACAATGCTCA-TCACTTACCTTCCCCTACCTCTCTCCCTTCTTGTCCTCCTCACCTCTT 167
||||| || ||| | | | | |||||||||||||||||||| |||||
Sbjct 209 GACAA----CAGTCA---A-GAT---C-A----GCTCCCTTCTTGTCCTCCTCATCTCTT 252
Query 168 CTATGGAGGAGGAGGAGGAAACTACATGATGAACAGATCAATGTC 212
| | | ||||||||||||||||||||||||||||| |||||
Sbjct 253 C-A---A--TGGAGGAGGAAACTACATGATGAACAGATCTATGTC 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5